PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G227700.1.p
Common NameGLYMA_12G227700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 286aa    MW: 32063 Da    PI: 8.2762
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G227700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.63.6e-101441811350
                          HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  13 NReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                          NR +A+rsR RK+++i eLe+ v +L++e +aL  ++ 
  Glyma.12G227700.1.p 144 NRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVA 181
                          *****************************999987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-6135196IPR004827Basic-leucine zipper domain
CDDcd147031.78E-20140187No hitNo description
SuperFamilySSF579591.2E-9141188No hitNo description
PfamPF001706.7E-8143180IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.8E-10144187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MAQLPPKIPT TPQNWPSFPH QRVPSMANFN PTTSTTTIVT TTTPPPPSWV DEFLDFSSAR  60
RGAHRRSASD SITFLETPFL EECRTGFDRL DEDQLISMFS DDIAVAALPP PPLSSVSNPS  120
SPTSDQNSSE EKPIAMGAGT ILANRQSAQR SRVRKLQYIS ELERSVTTLQ TEVSALSPRV  180
AFLDHQRLIL NVDNSALKQR IAALAQDKIF KDAHQEALKK EIERLRQIYH QQNLQKMNNN  240
NNNLQQTPPT SQPQQQPMQL HHHRQQQITV SQTLGCKDNK EQLLS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.642960.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots and panicles. {ECO:0000269|PubMed:18065552}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G227700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150402e-59AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028192886.11e-158basic leucine zipper 34-like
SwissprotQ5JMK68e-66BZP06_ORYSJ; Basic leucine zipper 6
TrEMBLK7LWF50.0K7LWF5_SOYBN; Uncharacterized protein
STRINGGLYMA12G35650.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20113488
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.16e-52bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]