PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G226600.1.p | ||||||||
Common Name | ERF6, GLYMA_12G226600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 194aa MW: 21237 Da PI: 10.0934 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.6 | 2.1e-20 | 26 | 76 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrdp gk++r++lg+f+taeeAa+a++ a+++++g+ Glyma.12G226600.1.p 26 RYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDTAAREFRGA 76 59*******.**********8...557*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.19E-23 | 26 | 84 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-33 | 26 | 84 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.9E-14 | 26 | 75 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.474 | 26 | 83 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-37 | 26 | 89 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.75E-30 | 26 | 83 | No hit | No description |
PRINTS | PR00367 | 8.3E-12 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.3E-12 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MAPRDSRATA FAGPGPGPSP AHKEIRYRGV RKRPWGRYAA EIRDPGKKTR VWLGTFDTAE 60 EAARAYDTAA REFRGAKAKT NFPTPSELIL NNNIRSPSQS STLDSSSPPS PPPPLDLTLT 120 PLSVAVTVFP VARPVLFFDA FARADAMIAV SRREMCGFER PAADFRRNDS DSDYNRRVLL 180 DLDLNVPPLP EVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-21 | 15 | 88 | 5 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.54994 | 0.0 | flower| hypocotyl| leaf| meristem| pod| root| seed coat| somatic embryo| stem| vegetative bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways, and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G226600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and by Alternaria brassicicola (locally and systemically), but only slightly by ethylene. Strong induction by wounding, cold or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT091541 | 0.0 | BT091541.1 Soybean clone JCVI-FLGm-8A12 unknown mRNA. | |||
GenBank | JN416601 | 0.0 | JN416601.1 Glycine max cultivar Jilin 32 ethylene-responsive transcription factor 6 (ERF6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001236636.1 | 1e-136 | ethylene-responsive transcription factor 6 | ||||
Swissprot | O80340 | 9e-48 | ERF78_ARATH; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | C6T283 | 1e-135 | C6T283_SOYBN; Ethylene-responsive transcription factor 6 | ||||
STRING | GLYMA12G35550.1 | 1e-135 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15210.1 | 2e-26 | ethylene responsive element binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G226600.1.p |
Entrez Gene | 100500601 |