PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G205200.1.p | ||||||||
Common Name | GLYMA_12G205200, LOC100784042 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 223aa MW: 25203.7 Da PI: 5.0369 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36 | 1.2e-11 | 16 | 65 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++E++RR+++++ ++eL +llP+ + p++ +s + +A++YIksL+ Glyma.12G205200.1.p 16 ERKIVEKNRRSQMKNLYSELNSLLPTrN---PKEAMSLPDQIDEAINYIKSLE 65 5689**********************55...9999****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.7E-12 | 12 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.15 | 12 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-10 | 14 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.20E-6 | 14 | 69 | No hit | No description |
Pfam | PF00010 | 7.9E-8 | 16 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0027 | 18 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0090575 | Cellular Component | RNA polymerase II transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MGQQQQGSQP SPTKVERKIV EKNRRSQMKN LYSELNSLLP TRNPKEAMSL PDQIDEAINY 60 IKSLETKVKL EQEKKERLKE RKRTRGGCSS SSEAQGSLKS PNIQIHETGN LLEVILTCGV 120 DSQFMFCEII RILHEENVEV INANSSMVGD LVIHVVHGEV EPSIYQFGAT KVSEKLKWFM 180 NGSFSDVEME PELMWNFKID ATEPWGLLDD LTLDNVLPPN TL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.18710 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G205200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003540366.1 | 1e-164 | transcription factor bHLH162 | ||||
Refseq | XP_028192548.1 | 1e-164 | transcription factor bHLH162-like | ||||
TrEMBL | A0A445HT63 | 1e-163 | A0A445HT63_GLYSO; Transcription factor bHLH162 | ||||
TrEMBL | I1LUH4 | 1e-163 | I1LUH4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G33260.1 | 1e-164 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF906 | 34 | 98 | Representative plant | OGRP1345 | 11 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 2e-33 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G205200.1.p |
Entrez Gene | 100784042 |