PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G190500.6.p
Common NameGLYMA_12G190500, LOC100785458
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family YABBY
Protein Properties Length: 132aa    MW: 14873.6 Da    PI: 9.9257
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G190500.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY145.46e-451110872170
                YABBY  72 leelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWa 161
                          +++++ ++++l++++  +++  +s + +++++ ++e+ pr+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWa
  Glyma.12G190500.6.p  11 QDTTQLQRQHLSVQEACSKELGSSSKCKSFETVDHEQQPRIPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWA 99 
                          67788889999988888888888888888899999999**999.9********************************************* PP

                YABBY 162 hfPkihfgl 170
                          hfP+ihfgl
  Glyma.12G190500.6.p 100 HFPHIHFGL 108
                          *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.2E-432108IPR006780YABBY protein
SuperFamilySSF470959.69E-953101IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.8E-556102IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MGASLQTFPS QDTTQLQRQH LSVQEACSKE LGSSSKCKSF ETVDHEQQPR IPPIRPPEKR  60
QRVPSAYNRF IKEEIQRIKA SNPDISHREA FSTAAKNWAH FPHIHFGLKL DGNKQAKLDQ  120
GDGTQKSNGF Y*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.594120.0flower| pod| seed coat| vegetative bud
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269|PubMed:10457020}.
UniprotTISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269|PubMed:10457020}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G190500.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0951270.0BT095127.1 Soybean clone JCVI-FLGm-6F4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001276158.13e-95protein YABBY 12
RefseqXP_028193109.13e-95putative axial regulator YABBY 2 isoform X5
SwissprotQ9XFB02e-50YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A0B2Q9P56e-94A0A0B2Q9P5_GLYSO; Putative axial regulator YABBY 2
TrEMBLC6TC486e-94C6TC48_SOYBN; Uncharacterized protein
STRINGGLYMA13G38750.18e-94(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.14e-43YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]