PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.12G190500.11.p

Common Name

GLYMA_12G190500, LOC100785458

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

YABBY

Protein Properties

Length: 130aa MW: 14632.3 Da PI: 9.9257

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.12G190500.11.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	143.9	1.7e-44	12	106	75	170
YABBY 75 lkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163 + +++++l++++ +++ +s + +++++ ++e+ pr+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahf Glyma.12G190500.11.p 12 DTTQRQHLSVQEACSKELGSSSKCKSFETVDHEQQPRIPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHF 99 4556666666666666666666666778888999999999.9********************************************* PP YABBY 164 Pkihfgl 170 P+ihfgl Glyma.12G190500.11.p 100 PHIHFGL 106 ***97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.8E-42	2	106	IPR006780	YABBY protein
SuperFamily	SSF47095	9.29E-9	51	99	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.8E-5	54	100	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MGASLQTFPS QDTTQRQHLS VQEACSKELG SSSKCKSFET VDHEQQPRIP PIRPPEKRQR 60 VPSAYNRFIK EEIQRIKASN PDISHREAFS TAAKNWAHFP HIHFGLKLDG NKQAKLDQGD 120 GTQKSNGFY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.59412	0.0	flower\| pod\| seed coat\| vegetative bud

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269\|PubMed:10457020}.
Uniprot	TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269\|PubMed:10457020}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.12G190500.11.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT095127	0.0	BT095127.1 Soybean clone JCVI-FLGm-6F4 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003540284.1	8e-94	transcription factor YABBY12 isoform X5
Refseq	XP_028193110.1	8e-94	putative axial regulator YABBY 2 isoform X6
Swissprot	Q9XFB0	6e-50	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A0R0H7E7	2e-92	A0A0R0H7E7_SOYBN; Uncharacterized protein
STRING	GLYMA13G38750.1	1e-79	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	4e-43	YABBY family protein

Link Out ? help Back to Top
Phytozome	Glyma.12G190500.11.p
Entrez Gene	100785458

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]