PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G186900.1.p
Common NameGLYMA_12G186900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 494aa    MW: 56117.9 Da    PI: 9.2281
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G186900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.33e-49171431128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          + pGfrF Ptdeel+++yL+kk++g++ ++ +vi+ev+++k+ePwdLp k++ ++++ew+fFs+r +ky++g++++rat+ gyWkatgk+
  Glyma.12G186900.1.p  17 MFPGFRFCPTDEELISYYLRKKMDGHQESV-QVISEVELCKYEPWDLPaKSFIQSDNEWFFFSPRGRKYPKGSQSKRATECGYWKATGKE 105
                          579************************988.99***************667777899********************************* PP

                  NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++v+s +++++g+k+tLvf+ grapkge+t+W+mhey +
  Glyma.12G186900.1.p 106 RNVKS-GSNVIGTKRTLVFHLGRAPKGERTEWIMHEYCI 143
                          *****.99*****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-559158IPR003441NAC domain
PROSITE profilePS5100553.42717159IPR003441NAC domain
PfamPF023657.2E-2619142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MEGVSREAQM SIAASSMFPG FRFCPTDEEL ISYYLRKKMD GHQESVQVIS EVELCKYEPW  60
DLPAKSFIQS DNEWFFFSPR GRKYPKGSQS KRATECGYWK ATGKERNVKS GSNVIGTKRT  120
LVFHLGRAPK GERTEWIMHE YCINEKSQDS LVICRLKKNT EFRLGDSSNR ASSSQRHPVG  180
CSSKRDSCSY GSPSMEQIDS VSEPNQRPVS EATLAVSSGQ PKERYEEDCY AEILKDDIIK  240
LDESSISVEG HTRPQDPIQM HPSPQGTSQR RIRLRVGNSK HSPAVVRFPC TMHSSKSTFF  300
ARITISLVVF PFFVFTLTVL YFLSLVGGNK QKVERERNIE LQFCSRVTLV SIAGKESPIF  360
QHCVTRFVPN SVHNLLFPLS PNLPLGTRRY LSIMNLGLPR SHPSFEWKQQ LVADVDSNPS  420
VSQKQHQISK AGETVKEKII LVQEKNIRRL NELVRHLQEQ LQQCRGRNGT INGTVSPLAE  480
RILELERQQI LED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-441615816164NO APICAL MERISTEM PROTEIN
1ut4_B6e-441615816164NO APICAL MERISTEM PROTEIN
1ut7_A6e-441615816164NO APICAL MERISTEM PROTEIN
1ut7_B6e-441615816164NO APICAL MERISTEM PROTEIN
3swm_A7e-441615819167NAC domain-containing protein 19
3swm_B7e-441615819167NAC domain-containing protein 19
3swm_C7e-441615819167NAC domain-containing protein 19
3swm_D7e-441615819167NAC domain-containing protein 19
3swp_A7e-441615819167NAC domain-containing protein 19
3swp_B7e-441615819167NAC domain-containing protein 19
3swp_C7e-441615819167NAC domain-containing protein 19
3swp_D7e-441615819167NAC domain-containing protein 19
4dul_A6e-441615816164NAC domain-containing protein 19
4dul_B6e-441615816164NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.564381e-151cotyledon| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Accumulates in imbibed seeds (PubMed:19704545). Detected in early stages of seed development, especially in the basal tip of immature embryo. Particularly expressed in vascular tissues of inflorescence stems, roots, leaves and petioles (PubMed:17410378). {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:19704545}.
UniprotTISSUE SPECIFICITY: Expressed in seeds, leaves, roots and inflorescence (PubMed:17410378). Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G186900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0911651e-149BT091165.1 Soybean clone JCVI-FLGm-7E22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028186647.10.0NAC domain-containing protein 40-like
SwissprotQ9XIN73e-95NAC40_ARATH; NAC domain-containing protein 40
TrEMBLA0A0R0HGS90.0A0A0R0HGS9_SOYBN; Uncharacterized protein
STRINGGLYMA12G31211.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73153346
Representative plantOGRP10249610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.12e-97NTM1-like 8
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. Tian H, et al.
    NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1.
    Plant Physiol., 2017. 174(4): p. 2363-2375
    [PMID:28649093]