PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G183900.1.p
Common NameGLYMA_12G183900, LOC100819306
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 322aa    MW: 36735.4 Da    PI: 7.8186
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G183900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.82e-05157176120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          + C++C+k+F+r  n++ H+
  Glyma.12G183900.1.p 157 FACSICSKTFNRYNNMQMHM 176
                          78*****************9 PP
2zf-C2H214.30.00012241263123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C +C+ksF  k + ++H +++
  Glyma.12G183900.1.p 241 FMCRKCSKSFAVKGDWRTHEKNC 263
                          89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.79E-5143180No hitNo description
SMARTSM003550.17157179IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-5157176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.45157184IPR007087Zinc finger, C2H2
PfamPF139122.2E-4157176IPR007087Zinc finger, C2H2
PROSITE patternPS000280159179IPR007087Zinc finger, C2H2
SMARTSM00355190204236IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.17E-6227261No hitNo description
Gene3DG3DSA:3.30.160.603.7E-5227261IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035556241261IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MSFRECNNVE NKNLCLQTPT FIEWLKPSSS SSLTSLISSS PPSYSLTQHE QLAQETIQFL  60
PFKEDQHIRV QKEGFEVKEE KKVEQVTVAL HIGLPNTGGH DPDDDNDHDA DDEKKVFHVK  120
EEEEPLKKGF QGNCSFNQER RFWIPTPAQI LVGPMQFACS ICSKTFNRYN NMQMHMWGHG  180
SEFRKGPDSL KGTQPAAMLR LPCYCCAQGC KNNINHPRAK PLKDFRTLQT HYKRKHGAKP  240
FMCRKCSKSF AVKGDWRTHE KNCGKLWYCT CGSDFKHKRS LKDHIRSFGK GHSPHPSLEG  300
FVEDEKECVT GSDDEDDVAH T*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G183900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539466.10.0zinc finger protein WIP3 isoform X1
RefseqXP_028193837.10.0zinc finger protein WIP3-like
SwissprotQ9SGD11e-122ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A445HS550.0A0A445HS55_GLYSO; Zinc finger protein WIP3
TrEMBLI1LTU80.0I1LTU8_SOYBN; Uncharacterized protein
STRINGGLYMA12G30930.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-112WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]