PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G168800.1.p
Common NameGLYMA_12G168800, LOC100806665
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 637aa    MW: 73129.5 Da    PI: 8.5795
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G168800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.4e-08459500240
                          SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                          ++W++eE +ll ++ +++++g   +W+ I++++g+gR+ +++
  Glyma.12G168800.1.p 459 KPWSKEEIDLLRKGMQKYPKGtsrRWEVISEYIGTGRSVEEI 500
                          69************************************9987 PP
2Myb_DNA-binding26.71.3e-08579622344
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                           W++  +  lv+a k ++++   +W+++a  ++ g+t +qck ++
  Glyma.12G168800.1.p 579 VWSAVQERALVQALKVFPKEtsqRWERVATAVP-GKTVNQCKKKF 622
                          6********************************.********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR006258.7E-94866IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.5E-2091196IPR001623DnaJ domain
SuperFamilySSF465652.75E-1993201IPR001623DnaJ domain
SMARTSM002713.9E-1394169IPR001623DnaJ domain
PfamPF002263.8E-1795174IPR001623DnaJ domain
PROSITE profilePS5007617.99995177IPR001623DnaJ domain
CDDcd062574.90E-1295166IPR001623DnaJ domain
PRINTSPR006258.7E-9118133IPR001623DnaJ domain
PRINTSPR006258.7E-9149169IPR001623DnaJ domain
PROSITE patternPS006360154173IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.601.5E-5453501IPR009057Homeodomain-like
SuperFamilySSF466896.58E-8453502IPR009057Homeodomain-like
PROSITE profilePS500906.69453508IPR017877Myb-like domain
SMARTSM007171.8E-7457510IPR001005SANT/Myb domain
PfamPF002492.9E-7459500IPR001005SANT/Myb domain
CDDcd001672.26E-5460502No hitNo description
PROSITE profilePS512939.28575630IPR017884SANT domain
Gene3DG3DSA:1.10.10.605.2E-5576622IPR009057Homeodomain-like
SMARTSM007171.5E-8576628IPR001005SANT/Myb domain
SuperFamilySSF466893.59E-9578633IPR009057Homeodomain-like
PfamPF002491.0E-6579622IPR001005SANT/Myb domain
CDDcd001675.70E-6580626No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MAVHTEFPLI TYSQEIVDGQ PIFVSSNCLP IKALKFEPAG HSFHSAALKL LGVQEDNNDA  60
DDKKVVDDKE QTYLPSDSYS SKSKKKSGTG DKQQDHYALL GLGHLRYLAT EDQIRKSYRE  120
TALRFHPDKQ AALLLAEETE AAKQTKKDEI ESHFKAIQEA YEVLIDPVKR RIYDSTDEFD  180
DEIPTDCAPQ DFFKVFGPAF MRNGRWSVNQ PIPSLGDDNT PLKEVDNFYN FWYSFKSWRE  240
FPHADEFDLE QAESRDHKRW MERQNAKLTE KARKEDYARI RTLVDNAYKR DPRILRRKEE  300
EKAEKQRKKE AKFLAKKVQE EEAARIAEEE RQRKEEEERQ AAKAALQQKK VKEKEKKLLR  360
KERARLRTLS GPILLQHLLD ISDDDVERLC MSLDIEQLRS LCENMEGRQM LLEQAKVLRY  420
ALSSKKEEVV DEKTNQQNAN GSIKANGISS LSNIEKKEKP WSKEEIDLLR KGMQKYPKGT  480
SRRWEVISEY IGTGRSVEEI MKATKTVLLQ KPDSSKAFDT FLEKRKPGAQ SIESPLTTRE  540
ELGVPAPAST NNVEDSQNKS TDNQNSPANG VSSSSEQDVW SAVQERALVQ ALKVFPKETS  600
QRWERVATAV PGKTVNQCKK KFALMKESFR NKKSAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A9e-2119129420123Zuotin
5dje_B9e-2119129420123Zuotin
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.508180.0leaf| root| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G168800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540155.10.0dnaJ homolog subfamily C member 2
TrEMBLK7LVE30.0K7LVE3_SOYBN; Uncharacterized protein
STRINGGLYMA12G29021.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60833348
Representative plantOGRP38231521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain