PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G168300.1.p | ||||||||
Common Name | GLYMA_12G168300, LOC100814151 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TCP | ||||||||
Protein Properties | Length: 435aa MW: 46029.5 Da PI: 7.1176 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 132.8 | 3.1e-41 | 72 | 170 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+s+ s++ Glyma.12G168300.1.p 72 NTKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAPpsk 161 679*****************************************************************9998888888888855555444 PP TCP 89 ........k 89 + Glyma.12G168300.1.p 162 saphtfhgA 170 444444431 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.7E-39 | 76 | 197 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.496 | 77 | 131 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001047 | Molecular Function | core promoter binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MELSDLQNKK QSSSSSSTGA THQQQQQQQQ SSSTHLVVPS PSNSSASLID ASLAIATRSD 60 DSTKKTQQPS TNTKRSTKDR HTKVDGRGRR IRMPATCAAR VFQLTRELGH KSDGETIEWL 120 LQQAEPAIIA ATGTGTIPAN FSTLNVSLRS SGSTLSAPPS KSAPHTFHGA LALAHHPYDE 180 AFQHPALLGF HPHHHQQQLL SADQIAEALP SAGGGDSGGN YLRKRYREDL FKDDNINNTQ 240 SQNDSGDADG DADGDGSSPK LPKEAGSGLL RPTNLLPATA MWASGPPGST IWMLPVTAAA 300 ASSSSSSSSA SSAASSESQM WAFPQSVSGF MPRFNLPVPG ALEFQGARAG SLQLGPSMLM 360 PPPPLPPQQQ QQPSQHLGLA MSDSNLGMLA ALNAYARAGL NINSDHHHHH HHHHHHQHQS 420 QPSESGEDAP NSSQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.21123 | 0.0 | cotyledon| meristem| pod |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G168300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 1e-137 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006592668.1 | 0.0 | transcription factor TCP8 | ||||
TrEMBL | K7LVD8 | 0.0 | K7LVD8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G28970.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6077 | 30 | 50 | Representative plant | OGRP4591 | 10 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58100.1 | 3e-68 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G168300.1.p |
Entrez Gene | 100814151 |