PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G104500.1.p
Common NameGLYMA_12G104500, LOC100778518
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 235aa    MW: 27093 Da    PI: 5.6214
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G104500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.2e-161562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g WT+eEd++lvd+++++G  +W++ ++  g+ R++k+c++rw++yl
  Glyma.12G104500.1.p 15 KGTWTAEEDKKLVDYITRYGHWNWRLLPKFAGLARCGKSCRLRWLNYL 62
                         799*****************99************************97 PP
2Myb_DNA-binding62.58.3e-2068112147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg+ T+eE+e +++++++lG++ W+tIa++m+ gRt++++k++w++ 
  Glyma.12G104500.1.p  68 RGNYTEEEEETIIKLHRRLGNR-WSTIAARMP-GRTDNEIKNHWHTN 112
                          899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.5841062IPR017930Myb domain
SuperFamilySSF466891.76E-2912109IPR009057Homeodomain-like
SMARTSM007178.4E-111464IPR001005SANT/Myb domain
PfamPF002492.8E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-221669IPR009057Homeodomain-like
CDDcd001675.78E-91762No hitNo description
PROSITE profilePS5129426.73163117IPR017930Myb domain
SMARTSM007171.4E-1767115IPR001005SANT/Myb domain
PfamPF002491.5E-1768112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2570116IPR009057Homeodomain-like
CDDcd001673.48E-781113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MMVRTPSCDK NGLKKGTWTA EEDKKLVDYI TRYGHWNWRL LPKFAGLARC GKSCRLRWLN  60
YLRPNLKRGN YTEEEEETII KLHRRLGNRW STIAARMPGR TDNEIKNHWH TNLKKRSQQH  120
NSVATESQIS NSNDQSPTEP TEDTAFQNFN SATQDCSPLS QHSSSSTSTE CTTVASTENL  180
LLLEDEFAFW DADTDLVSGN FWLEPYMLDI SYLPASEPEY FSQVFDVELW SHDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29131165107B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269|PubMed:24415840}.
UniprotTISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269|PubMed:24415840}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G104500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150395e-44AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540869.21e-177transcription factor MYB13
RefseqXP_028194105.11e-177transcription factor MYB13-like
SwissprotQ9SJX81e-60MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A445HND71e-175A0A445HND7_GLYSO; Transcription factor MYB14
TrEMBLK7LU241e-175K7LU24_SOYBN; Uncharacterized protein
STRINGGLYMA12G11330.21e-176(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.12e-60myb domain protein 41
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]