PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G091200.1.p | ||||||||
Common Name | GLYMA_12G091200, LOC100808618 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 249aa MW: 28439 Da PI: 7.2042 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 138.1 | 5.6e-43 | 6 | 140 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyW 83 ppGfrF Pt+eelv +yL++k+eg++ + +++vi+ +di+ vePw+Lp+ +++++++w+fFs+ ++++++g r++r+t+ gyW Glyma.12G091200.1.p 6 PPGFRFFPTEEELVGFYLHNKLEGQRnaiaIAIDRVIPVIDINGVEPWNLPTlageLCRGDTEQWFFFSPGQERETRGGRPSRTTACGYW 95 9*************************8877777779***************545654445777*************************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 katg+ v+s++++++g+kk++vfykg+ap g+kt+W m+eyr+ Glyma.12G091200.1.p 96 KATGSPCYVYSSHNKVIGVKKSMVFYKGKAPMGTKTKWKMNEYRA 140 *******************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.15E-45 | 4 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.533 | 5 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-23 | 6 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MEEDYPPGFR FFPTEEELVG FYLHNKLEGQ RNAIAIAIDR VIPVIDINGV EPWNLPTLAG 60 ELCRGDTEQW FFFSPGQERE TRGGRPSRTT ACGYWKATGS PCYVYSSHNK VIGVKKSMVF 120 YKGKAPMGTK TKWKMNEYRA IHVPSQSTPA TLHLTCEFSL CRVYVISGSF RAFDRRPLEK 180 EGAESRVHRI ENNFGGARAH QTCPHSQMLE AGESSITKWD VNNNNNNNNG FQLQEPVWEL 240 EWEHFNWL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-32 | 6 | 164 | 18 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-32 | 6 | 164 | 18 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-32 | 6 | 164 | 18 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-32 | 6 | 164 | 18 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-32 | 6 | 164 | 21 | 166 | NAC domain-containing protein 19 |
3swm_B | 1e-32 | 6 | 164 | 21 | 166 | NAC domain-containing protein 19 |
3swm_C | 1e-32 | 6 | 164 | 21 | 166 | NAC domain-containing protein 19 |
3swm_D | 1e-32 | 6 | 164 | 21 | 166 | NAC domain-containing protein 19 |
3swp_A | 1e-32 | 6 | 164 | 21 | 166 | NAC domain-containing protein 19 |
3swp_B | 1e-32 | 6 | 164 | 21 | 166 | NAC domain-containing protein 19 |
3swp_C | 1e-32 | 6 | 164 | 21 | 166 | NAC domain-containing protein 19 |
3swp_D | 1e-32 | 6 | 164 | 21 | 166 | NAC domain-containing protein 19 |
4dul_A | 1e-32 | 6 | 164 | 18 | 163 | NAC domain-containing protein 19 |
4dul_B | 1e-32 | 6 | 164 | 18 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.18780 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G091200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003539837.1 | 0.0 | NAC domain-containing protein 90 isoform X1 | ||||
Swissprot | Q9FMR3 | 7e-76 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | I1LRI3 | 0.0 | I1LRI3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G09670.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 | Representative plant | OGRP2278 | 11 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 9e-77 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G091200.1.p |
Entrez Gene | 100808618 |
Publications ? help Back to Top | |||
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