PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G076500.1.p
Common NameGLYMA_12G076500, LOC100815208
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 305aa    MW: 34612.5 Da    PI: 8.3927
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G076500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.61.7e-18233266134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C +C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  Glyma.12G076500.1.p 233 CLHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 266
                          99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.9E-16227277IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.53227263IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.6E-14231264IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577169.5E-14231286No hitNo description
CDDcd002022.78E-15232279No hitNo description
PROSITE patternPS003440233258IPR000679Zinc finger, GATA-type
PfamPF003202.3E-16233266IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MKDCWFFYNN FNGLSDESLD DVMDMEFLDL PLDFEDVETD AVEEQDWDAQ FNKFLEDPPP  60
PLGSFPLQSS EFCGQTQHEN VKLGKSFRAS LPKTVRPTYG KTIPIQNVSL KGKDLLQFQT  120
NSPISVFESS SSSPSVENSN FELPVIPTKR PRNKRQRLSN ISLLFSIPFI LTSPTFQKCQ  180
RMIFSESDLQ TQPAGELLCM VSKKLRKKDI PMLANRIEMK RSSSQESVAL RKCLHCEVTK  240
TPQWREGPMG PKTLCNACGV RYRSGRLFAE YRPAASPTFV SSLHSDSHKK VLEIRNRATQ  300
VTVR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.165560.0cotyledon| leaf| meristem| root| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G076500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0984950.0BT098495.1 Soybean clone JCVI-FLGm-12F13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539767.10.0GATA transcription factor 11
TrEMBLK7LTK40.0K7LTK4_SOYBN; Uncharacterized protein
STRINGGLYMA12G08131.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.24e-39GATA family protein