PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G073300.4.p | ||||||||
Common Name | GLYMA_12G073300, LOC100788303 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | AP2 | ||||||||
Protein Properties | Length: 479aa MW: 52373.8 Da PI: 8.1955 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 6e-17 | 156 | 205 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Glyma.12G073300.4.p 156 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 205 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.5E-9 | 156 | 205 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.82E-16 | 156 | 214 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.33E-11 | 157 | 215 | No hit | No description |
PROSITE profile | PS51032 | 17.794 | 157 | 213 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-17 | 157 | 214 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-32 | 157 | 219 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-6 | 248 | 292 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.62E-13 | 248 | 293 | No hit | No description |
SMART | SM00380 | 5.7E-13 | 249 | 297 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MLDLNLNAEW TDSFSNGDSP LPSQKFPEGS RNQMAESGTS NSSVVNADGS SNGGGDEDSC 60 STRADDVYTT FNFDILKVEG ANDVVTKELF PVMSEGAKGH ATSSFSARNG FVDLSFDREG 120 GDSEMKMLQP QNQPQTQTQT QQPAKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ 180 VYLGGFDTAH AAARAYDRAA IKFRGVDADI NFNLSDYEDD LKQMKNLSKE EFVHILRRQS 240 TGFSRGSSKY RGVTLHKCGR WEARMGQFLG KKAYDKAAIK CNGREAVTNF EPSTYEGEMK 300 SAAINEGGGQ NLDLNLGIAT PGPGPKENWG QLHFPSIPYN THGGRSSKME TNVNSGIGNP 360 SLKRMVVTED RPSLWNGMSP NFFPNGQERA ERIGIDPSKG LPNWAWQTHG QVNATPVPSF 420 SAAASSGFSI SATFPSTAIF PTSSMNSIPQ SLCFTSSSSP TRNVSEYYYQ VKPPQAPP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.15862 | 0.0 | hypocotyl| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G073300.4.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031086 | 0.0 | KT031086.1 Glycine max clone HN_CCL_205 AP2-EREBP transcription factor (Glyma12g07800.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006592244.1 | 0.0 | ethylene-responsive transcription factor RAP2-7 isoform X3 | ||||
Swissprot | Q9SK03 | 1e-125 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A0R0H280 | 0.0 | A0A0R0H280_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G07800.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.1 | 1e-111 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G073300.4.p |
Entrez Gene | 100788303 |