PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G073300.3.p
Common NameGLYMA_12G073300, LOC100788303
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 493aa    MW: 53973.6 Da    PI: 7.5601
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G073300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.2e-17156205155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Glyma.12G073300.3.p 156 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 205
                          78*******************......55************************997 PP
2AP241.14.3e-13248298155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Glyma.12G073300.3.p 248 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 298
                          89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.08E-16156214IPR016177DNA-binding domain
PfamPF008475.7E-9156205IPR001471AP2/ERF domain
CDDcd000182.69E-11157215No hitNo description
PROSITE profilePS5103217.794157213IPR001471AP2/ERF domain
SMARTSM003803.3E-32157219IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-17157214IPR001471AP2/ERF domain
PfamPF008471.3E-8248298IPR001471AP2/ERF domain
CDDcd000181.15E-25248308No hitNo description
SuperFamilySSF541717.85E-17248307IPR016177DNA-binding domain
PROSITE profilePS5103215.527249306IPR001471AP2/ERF domain
SMARTSM003802.5E-32249312IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-15249306IPR001471AP2/ERF domain
PRINTSPR003675.3E-6250261IPR001471AP2/ERF domain
PRINTSPR003675.3E-6288308IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MLDLNLNAEW TDSFSNGDSP LPSQKFPEGS RNQMAESGTS NSSVVNADGS SNGGGDEDSC  60
STRADDVYTT FNFDILKVEG ANDVVTKELF PVMSEGAKGH ATSSFSARNG FVDLSFDREG  120
GDSEMKMLQP QNQPQTQTQT QQPAKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ  180
VYLGGFDTAH AAARAYDRAA IKFRGVDADI NFNLSDYEDD LKQMKNLSKE EFVHILRRQS  240
TGFSRGSSKY RGVTLHKCGR WEARMGQFLG KKYIYLGLFD SEVEAARAYD KAAIKCNGRE  300
AVTNFEPSTY EGEMKSAAIN EGGGQNLDLN LGIATPGPGP KENWGQLHFP SIPYNTHGGR  360
SSKMETNVNS GIGNPSLKRM VVTEDRPSLW NGMSPNFFPN GERAERIGID PSKGLPNWAW  420
QTHGQVNATP VPSFSAAASS GFSISATFPS TAIFPTSSMN SIPQSLCFTS SSSPTRNVSE  480
YYYQVKPPQA PP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.338840.0cotyledon| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G073300.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310860.0KT031086.1 Glycine max clone HN_CCL_205 AP2-EREBP transcription factor (Glyma12g07800.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006592243.10.0ethylene-responsive transcription factor RAP2-7 isoform X2
SwissprotQ9SK031e-120RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLK7LTI10.0K7LTI1_SOYBN; Uncharacterized protein
STRINGGLYMA12G07800.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-122related to AP2.7