PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.12G072400.1.p

Common Name

GLYMA_12G072400, LOC100799737

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 306aa MW: 33654.3 Da PI: 7.6559

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.12G072400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	129	1.4e-40	35	96	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss Glyma.12G072400.1.p 35 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 96 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.7E-34	37	93	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-26	39	93	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.646	39	93	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	41	77	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005730	Cellular Component	nucleolus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MDPSSGQHQQ MSSQSLENML ACSKAQQERK PRPQPEQALK CPRCDSTNTK FCYYNNYSLS 60 QPRYFCKSCR RYWTKGGTLR NVPVGGGCRK NKRSSSSSSS TSKRVQDQAF TPNPNSLIGL 120 PSLSYDSSDL TLALARLQKQ SCGQLGYDEH DLSMLGNHHP STPCDNILGM HHHSSSSTNP 180 GFLDALRSGF LGTQSSNMQQ NLYYGYGNGD MGEVDNGNAS CGGEMMMMPY NDQEMSVAST 240 QAVTVTTMKQ EICNGREPSS ESRVLWGFPW QFNNADTNMG ELDSGRASWN GINSSWHGLL 300 NSPLM*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.28633	0.0	meristem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.12G072400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003539737.1	0.0	dof zinc finger protein DOF2.1
Refseq	XP_028192376.1	0.0	dof zinc finger protein DOF2.1-like
TrEMBL	A0A0B2PDL2	0.0	A0A0B2PDL2_GLYSO; Dof zinc finger protein DOF2.1
TrEMBL	I1LR01	0.0	I1LR01_SOYBN; Uncharacterized protein
STRING	GLYMA12G07710.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5026	30	51
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28510.1	2e-49	Dof family protein

Link Out ? help Back to Top
Phytozome	Glyma.12G072400.1.p
Entrez Gene	100799737