PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G062300.1.p
Common NameGLYMA_12G062300, LOC100816121
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 629aa    MW: 69559 Da    PI: 8.1265
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G062300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.3e-08527576147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          r +++ +E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Glyma.12G062300.1.p 527 RRPFSVDEVEALVQAVEKLGTGRWRDVKVCAFdnaKHRTYVDLKDKWKTL 576
                          6799**************************999**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542365.35E-7330418IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.905.0E-4332406No hitNo description
PROSITE profilePS500538.568335405IPR000626Ubiquitin domain
PROSITE profilePS5129413.709522581IPR017930Myb domain
SMARTSM007171.1E-7526579IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-10527577IPR009057Homeodomain-like
SuperFamilySSF466898.58E-16528608IPR009057Homeodomain-like
CDDcd116604.71E-16528578No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MSSDTSSEKD QSGFVKECQD ANKPSKSVIS DEGSCDKSGF SRLSSQTNNK NCGLKEFPHL  60
AIDGDAGTAS IVTSSTCLEG FIAEKLVDGN SHFKVENVTS TVNLDSSDYP KHSNFKLHGD  120
TSKGKDELHK FEKVPIGSGI DMCSFEDPLD DNPPALISLG GNAKLSGYND RIPCSLLSKS  180
RDNVPVVSRD DDENSYGCTH PINTKTKSFR LKTGIGDNRI SKRLASNFQK VAEKTKDHTH  240
SNNDGDWKRT YCSKRNCNKH QSSQMNIPFK KRKLFNYRSV SNSNGLIRSG GIYYSPENCM  300
NQDGCGSPPG MHKDPGMPSL EACQHQTLRS RGSHVNLRIK SFRVPELFIE VPETATIGSL  360
KRTVMDAVTA VLGGELHIGV FLQGKKVKDD SKTLLQTGIS HQNELDALGF TLEPNSSQSL  420
PIVCAAHSPG PKADITQPVI RYPSSPAVIH QRIQGNSDML PEHQVTSLGS HFENDHDSAP  480
SPVNASVEKG MKDSKELVTV PEMDEELAMV PVHQKSKRSE IVQRRIRRPF SVDEVEALVQ  540
AVEKLGTGRW RDVKVCAFDN AKHRTYVDLK DKWKTLVHTA RISPQQRRGE PVPQELLDRV  600
LVAHAYWSHQ QTKPQHKHHP ETETVFSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A5e-545116161105Telomere binding protein TBP1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.412490.0leaf| root| seed coat| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G062300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-142AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006592197.10.0telomere repeat-binding protein 2 isoform X1
SwissprotQ6R0E31e-115TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLI1LQP60.0I1LQP6_SOYBN; Uncharacterized protein
STRINGGLYMA12G06680.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Representative plantOGRP13911225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-115TRF-like 2