PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G040600.1.p
Common NamebZIP124, GLYMA_12G040600, Glyma12g04440.1
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 161aa    MW: 17688.8 Da    PI: 7.7828
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G040600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1422e-133088563
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                         ++ +r+++NRe+ArrsR RK++ ++ L   v++L +eN++    ++  ++++ ++++e+
  Glyma.12G040600.1.p 30 RKRKRMISNRESARRSRMRKQKHLDDLVSQVAQLRKENQQILTSVNITTQQYLSVEAEN 88
                         6789************************************9999999999998888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-182690IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.7492891IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.2E-1129105No hitNo description
PfamPF001702.3E-103077IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.06E-133082No hitNo description
CDDcd147024.72E-213181No hitNo description
PROSITE patternPS0003603348IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MASSSGTSSG SSLLQNSGSE EDLQAVMDQR KRKRMISNRE SARRSRMRKQ KHLDDLVSQV  60
AQLRKENQQI LTSVNITTQQ YLSVEAENSV LRAQVGELSH RLESLNEIVD VLNATTVAGF  120
GAAATSSTFV EPINNNSFFN PLNMGYLNHP IMASADILQY *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12950RKRKRMISNRESARRSRMRKQK
24249RRSRMRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.70450.0flower| leaf| meristem| root| seed coat| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269|PubMed:23461773}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G040600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0964840.0BT096484.1 Soybean clone JCVI-FLGm-9L12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001238344.11e-114bZIP transcription factor bZIP124
RefseqXP_028194801.11e-114bZIP transcription factor 11-like
SwissprotC0Z2L51e-51BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A445HKP61e-113A0A445HKP6_GLYSO; BZIP transcription factor 44
TrEMBLQ0GPF81e-113Q0GPF8_SOYBN; BZIP transcription factor
STRINGGLYMA12G04440.11e-113(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61334147
Representative plantOGRP5511678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.16e-48G-box binding factor 6
Publications ? help Back to Top
  1. Liao Y, et al.
    Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis.
    Planta, 2008. 228(2): p. 225-40
    [PMID:18365246]
  2. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]