PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G037700.1.p
Common NameLOC100776188
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 290aa    MW: 31913.6 Da    PI: 5.1245
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G037700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.77.5e-19210243134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          Cs+C++ kTp+WR gp g+ktLCnaCG+++++ +
  Glyma.12G037700.1.p 210 CSHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGR 243
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.1E-811286IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.372204240IPR000679Zinc finger, GATA-type
SMARTSM004012.3E-14204258IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-14206266No hitNo description
Gene3DG3DSA:3.30.50.102.5E-14208241IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.90E-14209266No hitNo description
PROSITE patternPS003440210235IPR000679Zinc finger, GATA-type
PfamPF003201.5E-16210243IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEVAAAKALK PSLRTEFIFP QAIYDEILCF NANNVVAGED FSVDDLLDFS NGEFQVGKDF  60
DDYEEDEDEE KGSTSGSLQS QDRTEDDSNS NSTAGGGGDS VFAGELSVPA DDVADLEWVS  120
HFVDDSLPEL SLLYPVRCSE QTRVCTEPEP RPGSVQTIPA VPRKPRTGKT RKPNARVWSS  180
MSSLCSSVTA KKQKKKVEAQ NGGAQSLRRC SHCQVQKTPQ WRTGPLGPKT LCNACGVRFK  240
SGRLFPEYRP ACSPTFSDDI HSNSHRKVLE MRRKKEIVES DRIQLIPSC*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G037700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540668.20.0GATA transcription factor 7
RefseqXP_028192446.10.0GATA transcription factor 7-like
SwissprotO655151e-58GATA7_ARATH; GATA transcription factor 7
TrEMBLA0A0R0H1140.0A0A0R0H114_SOYBN; GATA transcription factor
TrEMBLA0A445HK470.0A0A445HK47_GLYSO; GATA transcription factor
STRINGGLYMA12G04180.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110834107
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.14e-56GATA transcription factor 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]