PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G033000.1.p | ||||||||
Common Name | GLYMA_12G033000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bZIP | ||||||||
Protein Properties | Length: 272aa MW: 29548 Da PI: 6.8258 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 26.2 | 1.7e-08 | 89 | 138 | 2 | 51 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 k++ +r N+eA r++R++Kka+ + Le++v +L a N+ L k+l+ Glyma.12G033000.1.p 89 KSSSSKKRSLGNKEAVRKYREKKKARAASLEDEVVKLRALNQHLMKKLKG 138 56667899999**********************************99974 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.8E-12 | 85 | 156 | No hit | No description |
SMART | SM00338 | 5.0E-7 | 88 | 155 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 4.9E-11 | 89 | 145 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.38E-7 | 92 | 137 | No hit | No description |
CDD | cd14686 | 8.84E-11 | 100 | 147 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071294 | Biological Process | cellular response to zinc ion | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MDDGELDFSN HEVFSSPNMG ELPSSGSMDS FFDELLKDTH ACTHTHTCNP PGPDFSHTHT 60 CYHVHTKIVP APEEDHVATD DTAESAEKKS SSSKKRSLGN KEAVRKYREK KKARAASLED 120 EVVKLRALNQ HLMKKLKGQA ALEAEIARLK CLLVDIRGRI EGEIGSFPYQ KPTPNANPPV 180 ANLPGSYVMN PCNLQCDDRV YCHHPYGKIG ESAALNGEEF DGCEFENLQC LASQNLGLKD 240 LRACGVGQAR SNVNSSASNK RKGGSHAVTA G* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.28630 | 0.0 | cotyledon| hypocotyl| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G033000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235419 | 0.0 | AC235419.1 Glycine max strain Williams 82 clone GM_WBb0136G05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006591924.1 | 0.0 | bZIP transcription factor bZIP122 isoform X1 | ||||
Refseq | XP_006591929.1 | 0.0 | bZIP transcription factor bZIP122 isoform X1 | ||||
Refseq | XP_028194237.1 | 0.0 | basic leucine zipper 23-like isoform X1 | ||||
Refseq | XP_028194238.1 | 0.0 | basic leucine zipper 23-like isoform X1 | ||||
Swissprot | Q8GTS2 | 1e-110 | BZP23_ARATH; Basic leucine zipper 23 | ||||
TrEMBL | A0A445HK49 | 0.0 | A0A445HK49_GLYSO; Basic leucine zipper 23 isoform A | ||||
TrEMBL | I1LPT1 | 0.0 | I1LPT1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G03690.5 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2567 | 32 | 77 | Representative plant | OGRP1970 | 15 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16770.1 | 2e-94 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G033000.1.p |
Entrez Gene | 780549 |
Publications ? help Back to Top | |||
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