PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G247300.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 375aa    MW: 42858.4 Da    PI: 5.5654
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G247300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.33.7e-2764145286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          W ++e++ Li +rrem+  ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++     s +++y+++++
  Glyma.11G247300.1.p  64 WVQDETRSLIGLRREMDALFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKEID 145
                          ********************************************************************84...556899***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-455125IPR009057Homeodomain-like
PROSITE profilePS500908.45556120IPR017877Myb-like domain
SMARTSM007170.001160122IPR001005SANT/Myb domain
CDDcd122036.81E-2962127No hitNo description
PfamPF138371.2E-2163147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MYLSEKPRPI DFYKEEGARD MMIEVVSNGD LPPPPPPPPM ILGESSGEDP EVEIKAPKKR  60
AETWVQDETR SLIGLRREMD ALFNTSKSNK HLWEQISAKM REKGFDRSPT MCTDKWRNLL  120
KEFKKAKHQD RGSGSAKMSY YKEIDEILRE RSKNVQYKSP TPPPKVDSFM QFADKGIDDT  180
SISFGPVEAT GRPTLNLERS LDHDGHPLAI TTADAVAASG VPPWNWRETP GNGGESQSCC  240
GRVISVKWGD YTRRIGIDGT PEAIKEAIRA AFRLRTKRTF WLEDEDQIIR SIDREMPLGN  300
YTLHIDEGMA IKLPLYDEPD HIPVHTEDKI FYTEDDFRDF LTRRGWICLR EFDSYRNIDN  360
MDDLRPGAIY RGVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A2e-5058143186DNA binding protein GT-1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.436390.0cotyledon| flower| root| somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00004PBMTransfer from 920224Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G247300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2852650.0EU285265.1 Glycine max GT-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538569.10.0trihelix transcription factor GT-1 isoform X1
RefseqXP_028197355.10.0trihelix transcription factor GT-1-like isoform X1
SwissprotQ9FX530.0TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A0R0HW240.0A0A0R0HW24_SOYBN; Uncharacterized protein
TrEMBLA0A445HHW10.0A0A445HHW1_GLYSO; Trihelix transcription factor GT-1
STRINGGLYMA11G37390.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68173248
Representative plantOGRP59331318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.10.0Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]