PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G242200.1.p
Common NameGLYMA_11G242200, LOC100781155
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 315aa    MW: 35762.3 Da    PI: 4.5942
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G242200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.5e-1960113356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k+++++ eq+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Glyma.11G242200.1.p  60 KKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113
                          56689************************************************9 PP
2HD-ZIP_I/II130.56.7e-4259151193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++ydalk +  +L++++e+Lr++
  Glyma.11G242200.1.p  59 EKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNFGTLNQDNEALRKQ 148
                          69**************************************************************************************** PP

          HD-ZIP_I/II  91 lke 93 
                          +ke
  Glyma.11G242200.1.p 149 IKE 151
                          997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.34E-2040117IPR009057Homeodomain-like
PROSITE profilePS5007117.92955115IPR001356Homeobox domain
SMARTSM003896.1E-1858119IPR001356Homeobox domain
PfamPF000463.5E-1660113IPR001356Homeobox domain
CDDcd000861.69E-1660116No hitNo description
Gene3DG3DSA:1.10.10.604.0E-2062122IPR009057Homeodomain-like
PRINTSPR000318.8E-68695IPR000047Helix-turn-helix motif
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PRINTSPR000318.8E-695111IPR000047Helix-turn-helix motif
PfamPF021838.4E-17115156IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MKRLNSSDSS TALMTIFPSS STEEHSPRNS HHMYGREFRS MLDGLDEEGC VEEPGHQSEK  60
KRRLSVEQVK ALEKNFEVEN KLEPERKVKL AQELGLQPRQ VAVWFQNRRA RWKTKQLERD  120
YGVLKANYDA LKLNFGTLNQ DNEALRKQIK ELKSRLLQEE NTAGSGVSVK EEEITTMPAD  180
SEEKTMEQSK SDPPSETSNI NPSSESSEED HLNYECFNNN SDDCVVGGSA AASLLQVDFM  240
KDGSSDSDGS SAILNEDTMY LPSSMNCFQF QKPYHHAQYV KTEEHNFLSA DEACNFFSDE  300
QAPTLQWYCP EQWS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107115RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.31540.0cotyledon| epicotyl| flower| hypocotyl| leaf| meristem| pod| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G242200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416, ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352150.0AC235215.1 Glycine max strain Williams 82 clone GM_WBb0020M12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538603.10.0homeobox-leucine zipper protein ATHB-6
RefseqXP_028196075.10.0homeobox-leucine zipper protein ATHB-6-like
RefseqXP_028196076.10.0homeobox-leucine zipper protein ATHB-6-like
SwissprotP466686e-75ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6
TrEMBLA0A445HHY60.0A0A445HHY6_GLYSO; Homeobox-leucine zipper protein ATHB-6 isoform A
TrEMBLI1LNH70.0I1LNH7_SOYBN; Uncharacterized protein
STRINGGLYMA11G37920.50.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.11e-75homeobox protein 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]