PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G192400.1.p
Common NameGLYMA_11G192400, LOC100802399
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 411aa    MW: 45777.6 Da    PI: 8.5353
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G192400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.11.9e-07232254123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y C+ Cgk F+r  nL+ H+r H
  Glyma.11G192400.1.p 232 YFCQVCGKGFKRDANLRMHMRAH 254
                          78*******************99 PP
2zf-C2H2110.0014362377621
                          TTEEESSHHHHHHHHH CS
              zf-C2H2   6 CgksFsrksnLkrHir 21 
                          Cg++Fsrk+ L+ Hi 
  Glyma.11G192400.1.p 362 CGTTFSRKDKLMGHIT 377
                          **************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.68E-6230257No hitNo description
PROSITE profilePS5015713.193232259IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-7232257IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003556.7E-4232254IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280234254IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-7289294IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355170291324IPR015880Zinc finger, C2H2-like
SMARTSM0035528329351IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MMPKATISTT PTNDFQELHM FPAAVNNEYL VSPSLEASSS SSPSHSSSNS LLFYLSLLKD  60
KLGQLHNLVG VLVSPQQNLP ESTPTAISTI NNTIQEIIVA ATSMRFTCQQ MISSSPSGTN  120
TINELHQQQI DHGRLLPPSH HESNFINNNR GVPSNINIVS HINRGQSFLS NSIEGEASLD  180
WFAESYNNSN SGNNYFNPKD DEAANIINNI MGETSDDIIE LDAADLLAKY SYFCQVCGKG  240
FKRDANLRMH MRAHGEEYKT SAALRNPMKK NNKKESNLLF LGAEGSVTKR YSCPQQGCRW  300
NQRHAKFQPL KSMICAKNHY KRSHCPKMYM CNRCNQKQFS VLSDLRTHEK HCGDYPKWQC  360
SCGTTFSRKD KLMGHITLFA GHTPVPNING MSSYMGKSEV QQNNIAGGLR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G192400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150396e-85AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539188.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
RefseqXP_028189311.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
TrEMBLA0A445I3900.0A0A445I390_GLYSO; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLI1LKY90.0I1LKY9_SOYBN; Uncharacterized protein
STRINGGLYMA11G19810.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.14e-87C2H2 family protein