PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G186600.3.p
Common NameGLYMA_11G186600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 470aa    MW: 52929.6 Da    PI: 7.3459
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G186600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.1e-10418467147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          + +W+  E+e l  +vk++G g+W++I +      ++R++ ++k++w++ 
  Glyma.11G186600.3.p 418 KRKWSSLEEETLRAGVKMFGEGNWASIRSFYSnvfENRSGVDLKDKWRNM 467
                          569*********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-14412469IPR009057Homeodomain-like
PROSITE profilePS5129417.691413469IPR017930Myb domain
SuperFamilySSF466895.23E-15414468IPR009057Homeodomain-like
SMARTSM007172.1E-6417469IPR001005SANT/Myb domain
PfamPF002491.0E-8418467IPR001005SANT/Myb domain
CDDcd116601.17E-17419469No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MDSDISQWVT EFLLRSSVPD SLIQKTLAAL PLSTASPRLK KTLLLRTLQT LLRTATLSET  60
ALDILELLEP SAPVSDAHRR AYCAVAVECT VKYLAACPED IDGEYAGAVR RIWRGRVSAL  120
KARWSRLVSG ELARWRDVVE DAFGDSRARQ RLVGLNSRRD AMKEVRVFLK EAWGAMGPSF  180
LETVAAKEKN KDEGARDNDD NDNICDDHDD GACMEDVAMH GENQEPLEES VDANQEVGGF  240
DLSPRRDKAI PKRNSQLKHK HSAFRASHRG RGVEISSPKE VKATKSWSKH DPVPSAEVKK  300
VRESLKSSSL ELRALVKDPL PHALHISDVV RSKLATSDTK TEPLIENQHE DVEVQDPDVC  360
QSIVPFQPND VNLGKKSFVH CSNIHQPYLM EQNISARTFE WEDSVDNSPQ ARQPRRRKRK  420
WSSLEEETLR AGVKMFGEGN WASIRSFYSN VFENRSGVDL KDKWRNMIR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1413417PRRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.184970.0cotyledon| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G186600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006591259.10.0uncharacterized protein LOC100819448
RefseqXP_006591260.10.0uncharacterized protein LOC100819448
TrEMBLK7LR440.0K7LR44_SOYBN; Uncharacterized protein
STRINGGLYMA11G30814.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.21e-16MYB_related family protein