PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G185900.1.p
Common NameGLYMA_11G185900, LOC100814653
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 304aa    MW: 34741.3 Da    PI: 8.8585
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G185900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.66.5e-131051243
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                         +i n+ +r+    kR++ +lKK eELS LC++e++ i+++++
  Glyma.11G185900.1.p 10 FIGNDFKRKNVCKKRKQSLLKKTEELSMLCGVEACAIVYGPN 51
                         6889999999999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.0E-12160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.316151IPR002100Transcription factor, MADS-box
CDDcd002667.84E-24285No hitNo description
SuperFamilySSF554559.81E-19495IPR002100Transcription factor, MADS-box
PfamPF003192.1E-121152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAPGKLKLTF IGNDFKRKNV CKKRKQSLLK KTEELSMLCG VEACAIVYGP NDPRPVIWPS  60
ELGVENVLRK FMSMPQLEQS KKMVNQESFI AQRIMKSKEK LQKIVKENKE IEMSLFMAHC  120
FKTGMFQPDI NMTTADMNVL SSIIEQNLKD IDKRMEMLKA NQVIPNQPDV ETSTLQPQIM  180
HTLTYQPPMQ TFAFQPQIQI SEFQTQIQTP EFPTQTYQSK MQTQTFQPQM QSPALFQPRM  240
QSPAFFQPQI MQTPSYQPHT QTPALEDMTL LNYGNGLGMQ MQQFNGNGYE TTMPAFGGAN  300
FPL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G185900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2357390.0AC235739.1 Glycine max strain Williams 82 clone GM_WBb0002K19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003537344.10.0agamous-like MADS-box protein AGL80
RefseqXP_028186496.10.0agamous-like MADS-box protein AGL80
TrEMBLA0A0R0HJ530.0A0A0R0HJ53_SOYBN; Uncharacterized protein
TrEMBLA0A445I4D30.0A0A445I4D3_GLYSO; Agamous-like MADS-box protein AGL80
STRINGGLYMA11G30482.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3598322
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-39AGAMOUS-like 80