PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G182000.1.p | ||||||||
Common Name | GLYMA_11G182000, LOC100781321 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 247aa MW: 28409.7 Da PI: 6.5176 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 137.6 | 7.9e-43 | 5 | 137 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 ppGfrF Pt+eelv +yL++k+eg++ + +++vi+ +d + vePw+Lp+ +++++++w+fFs+ ++++a+g r++r+t+ gyWka Glyma.11G182000.1.p 5 PPGFRFFPTEEELVGFYLHNKLEGQRnaIAIDRVIPVIDFNGVEPWNLPTfageLCRGDTEQWFFFSPGQEREARGGRPSRTTACGYWKA 94 8************************977777789***************546654445777***************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+ v+s++++++g+kk++vfykg+ap g+kt+W m+eyr+ Glyma.11G182000.1.p 95 TGSPGYVYSSDNKVIGVKKSMVFYKGKAPMGRKTKWKMNEYRA 137 *****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.85E-46 | 3 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.217 | 4 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-23 | 5 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MEDHPPGFRF FPTEEELVGF YLHNKLEGQR NAIAIDRVIP VIDFNGVEPW NLPTFAGELC 60 RGDTEQWFFF SPGQEREARG GRPSRTTACG YWKATGSPGY VYSSDNKVIG VKKSMVFYKG 120 KAPMGRKTKW KMNEYRAIHI PNQSTPQLRW EFSLCRVYVI SGSFRAFDRR PLEKDGSESR 180 AKVDGLCSSE ISHFEGLHGS HSQMLEVRES SSTNWDVNNN NNDKSNNEVQ LQEPLWELEW 240 EQFNWL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-32 | 5 | 158 | 18 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-32 | 5 | 158 | 18 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-32 | 5 | 158 | 18 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-32 | 5 | 158 | 18 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-31 | 5 | 158 | 21 | 166 | NAC domain-containing protein 19 |
3swm_B | 1e-31 | 5 | 158 | 21 | 166 | NAC domain-containing protein 19 |
3swm_C | 1e-31 | 5 | 158 | 21 | 166 | NAC domain-containing protein 19 |
3swm_D | 1e-31 | 5 | 158 | 21 | 166 | NAC domain-containing protein 19 |
3swp_A | 1e-31 | 5 | 158 | 21 | 166 | NAC domain-containing protein 19 |
3swp_B | 1e-31 | 5 | 158 | 21 | 166 | NAC domain-containing protein 19 |
3swp_C | 1e-31 | 5 | 158 | 21 | 166 | NAC domain-containing protein 19 |
3swp_D | 1e-31 | 5 | 158 | 21 | 166 | NAC domain-containing protein 19 |
4dul_A | 9e-32 | 5 | 158 | 18 | 163 | NAC domain-containing protein 19 |
4dul_B | 9e-32 | 5 | 158 | 18 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.18780 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G182000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 2e-80 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003538107.1 | 0.0 | NAC domain-containing protein 90 | ||||
Refseq | XP_028188794.1 | 0.0 | NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 4e-82 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A445I294 | 0.0 | A0A445I294_GLYSO; NAC domain-containing protein 90 | ||||
TrEMBL | I1LKP9 | 0.0 | I1LKP9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G18770.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 | Representative plant | OGRP2278 | 11 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 6e-80 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G182000.1.p |
Entrez Gene | 100781321 |
Publications ? help Back to Top | |||
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