PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G174400.1.p
Common NameGLYMA_11G174400, LOC100806121
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 606aa    MW: 65786.8 Da    PI: 6.6142
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G174400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.2e-07279299526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ f++ G+C+ Gd C +aHg
  Glyma.11G174400.1.p 279 PCPEFRK-GFCSKGDACDYAHG 299
                          8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.0E-1431174IPR020683Ankyrin repeat-containing domain
PfamPF127964.5E-868142IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.31E-1372149IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.16775145IPR020683Ankyrin repeat-containing domain
SMARTSM002480.01975105IPR002110Ankyrin repeat
CDDcd002041.32E-1277169No hitNo description
PROSITE profilePS5008812.129110145IPR002110Ankyrin repeat
SMARTSM002480.0026110142IPR002110Ankyrin repeat
SMARTSM003565.4E-5274300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.319274301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4279301IPR000571Zinc finger, CCCH-type
SMARTSM003565.4309331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MCSGSKRKPS QTGLIMGDEH GRQEGLHHKI SALLEFSAAD DVTSFKDAVE KEGHDVDEVG  60
LWYGRRVGSK ELCFEERTPL MIAAMFGSKS VLSYILGTGR VDVNRACGSD GATALHCAVA  120
GGSSASLEVI KLLLDASADV STVDANGNRS CDLIFSVSNG VFNSRKRILQ AVLEGADGID  180
EACLRFEEAV GQMEKQQQQD VDALQVSKDG TEKKDYPVDL SLPDIKNGIY SSDEFRMYTF  240
KVRPCSRAYS HDWTECPFVH PGENARRRDP RRYQYSCVPC PEFRKGFCSK GDACDYAHGI  300
FECWLHPAQY KTRLCKETGC TRRVCFFAHN VEDLRPVYAS TGSAMPSPRS YSVSSPPLDP  360
FTLGSPSALI PPASSPPLTP SGGSSPAGGT MWHSQIHVAV PTLQLPQSRL KSALNARDVE  420
LDMELLGIEN HRCLMQQLMM EGTAGLSSPS NWNNSMPNSP SLCDYTGDFN RLSGVQPTNL  480
EDVFGSQIQS PARIQVHQNV NQQLRGYPSN LYNSSVIGSP SFRVDPSGAA AAMALNPRNA  540
AFANRSQSFM VNGDTEFPSP ATSTAAKPST FSGWGPSDGK LDWSIRGDEL KKPSKSSSVG  600
FLKQQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.450830.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G174400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539330.10.0zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLI1LLK70.0I1LLK7_SOYBN; Uncharacterized protein
STRINGGLYMA11G27130.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-165C3H family protein