PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G160200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 162aa MW: 18696.6 Da PI: 7.5116 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 24.8 | 2.7e-08 | 1 | 23 | 21 | 43 |
HHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 21 lKKAeELSvLCdaevaviifsst 43 +KK +E+S+LC++e + ii+s++ Glyma.11G160200.1.p 1 MKKMNEISTLCGIETCAIIYSPN 23 8********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00266 | 5.30E-17 | 1 | 57 | No hit | No description |
Pfam | PF00319 | 4.0E-6 | 1 | 24 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.1E-13 | 1 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MKKMNEISTL CGIETCAIIY SPNDPQPEVW PSDSGVQRVL SRFMEMPEVR QSRKMLNQES 60 FLRQMITKGQ QQLTRQRNEN RKKEMTNLML QYLTAGKVVG NPSLVDLNDL SWLIDQNLNE 120 IEKKITMLQI QEVVIPVIEN EGHMNHVQGL ESNMDTKKKQ H* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G160200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028189230.1 | 1e-116 | agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 3e-39 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A0B2P4X5 | 1e-115 | A0A0B2P4X5_GLYSO; Agamous-like MADS-box protein AGL80 | ||||
STRING | GLYMA11G26260.1 | 1e-115 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF452 | 33 | 154 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-41 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G160200.1.p |
Publications ? help Back to Top | |||
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