PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.11G159700.1.p | ||||||||
Common Name | GLYMA_11G159700, LOC100781335 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 172aa MW: 19523.8 Da PI: 9.4895 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.6 | 3.9e-14 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i+n ++r+ + kR+ng+lKK E+ +LC+++++ ii+ ++ Glyma.11G159700.1.p 11 ISNPRKRKAALKKRKNGLLKKIDEITTLCGIQACAIIYTPD 51 99************************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.7E-18 | 1 | 80 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.166 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.8E-16 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.7E-6 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-13 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.7E-6 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 172 aa Download sequence Send to blast |
MARKKVDFTY ISNPRKRKAA LKKRKNGLLK KIDEITTLCG IQACAIIYTP DEPEPEVWPS 60 NQGVESVIFN FRGVSESARN KRMFCQESLL MKNITLAQGQ LKKLRDENRK KEIGLFLCQY 120 FAGGNNLGKC NIIDLNDITF LADKKLEEIT KKIEMLLVQE VTPATENEDK P* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 2 | 24 | RKKVDFTYISNPRKRKAALKKRK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.11G159700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003539310.1 | 1e-123 | agamous-like MADS-box protein AGL80 | ||||
Refseq | XP_028186387.1 | 1e-123 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A0B2QM37 | 1e-122 | A0A0B2QM37_GLYSO; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | K7LQS0 | 1e-122 | K7LQS0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G26120.2 | 1e-122 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF35971 | 2 | 2 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48670.1 | 4e-34 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.11G159700.1.p |
Entrez Gene | 100781335 |