PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.11G145400.2.p | ||||||||
Common Name | GLYMA_11G145400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 225aa MW: 25416.5 Da PI: 10.9873 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.2 | 1.1e-18 | 153 | 186 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C +tkTp+WR+gp g+ktLCnaCG++yr+ + Glyma.11G145400.2.p 153 CLHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 186 99*****************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.8E-16 | 147 | 197 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.675 | 147 | 183 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.66E-15 | 149 | 209 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.1E-14 | 151 | 184 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.34E-15 | 152 | 199 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 153 | 178 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.5E-16 | 153 | 186 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 225 aa Download sequence Send to blast |
MEEGTFIELK LAKTVRPAYG KTIPVQKVSL KGKDLLQFQT NSPVSVFESS SSSPSVENSN 60 FELPVIPTKR PRTKRRRLSN ISLLYSIPFI LTSPAFQKFQ RMDFSKSDIQ TQPSGELLCK 120 FKKKQRKKDI PLPTNKIEMK RSSSQESVAP RKCLHCEVTK TPQWREGPMG PKTLCNACGV 180 RYRSGRLFAE YRPASSPTFV ASLHSNSHKK VLEIRNRATQ VTVR* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 73 | 77 | KRRRL |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.16556 | 0.0 | cotyledon| leaf| meristem| root| somatic embryo| stem |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.11G145400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT098495 | 0.0 | BT098495.1 Soybean clone JCVI-FLGm-12F13 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003538192.1 | 1e-155 | GATA transcription factor 11 | ||||
Refseq | XP_014619533.1 | 1e-155 | GATA transcription factor 11 | ||||
TrEMBL | A0A0R0HNA2 | 1e-163 | A0A0R0HNA2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G20480.1 | 1e-154 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54810.2 | 3e-39 | GATA family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.11G145400.2.p |