PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G145400.1.p
Common NameGLYMA_11G145400, LOC100781869
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 306aa    MW: 34469.4 Da    PI: 9.6125
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G145400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.61.7e-18234267134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C +C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  Glyma.11G145400.1.p 234 CLHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 267
                          99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.675228264IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-16228278IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-15230290No hitNo description
Gene3DG3DSA:3.30.50.101.6E-14232265IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.14E-16233280No hitNo description
PROSITE patternPS003440234259IPR000679Zinc finger, GATA-type
PfamPF003202.3E-16234267IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0016021Cellular Componentintegral component of membrane
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MKDCWFFDNN FNGLSDESLD DVMDMELLDL PLDFEDVETD AVEEQDWDAQ LKLLEDPPPP  60
LGVFPLQQSS AFCGQTRNEN AKLGSKSFSA SLAKTVRPAY GKTIPVQKVS LKGKDLLQFQ  120
TNSPVSVFES SSSSPSVENS NFELPVIPTK RPRTKRRRLS NISLLYSIPF ILTSPAFQKF  180
QRMDFSKSDI QTQPSGELLC KFKKKQRKKD IPLPTNKIEM KRSSSQESVA PRKCLHCEVT  240
KTPQWREGPM GPKTLCNACG VRYRSGRLFA EYRPASSPTF VASLHSNSHK KVLEIRNRAT  300
QVTVR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154158KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.165560.0cotyledon| leaf| meristem| root| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G145400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0984950.0BT098495.1 Soybean clone JCVI-FLGm-12F13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538192.10.0GATA transcription factor 11
RefseqXP_014619533.10.0GATA transcription factor 11
TrEMBLI1LL490.0I1LL49_SOYBN; Uncharacterized protein
STRINGGLYMA11G20480.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.26e-38GATA family protein