PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G142900.1.p
Common NameGLYMA_11G142900, LOC100776886
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 267aa    MW: 30870.5 Da    PI: 6.1019
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G142900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.4e-17855148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT++Ed +lv  v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
  Glyma.11G142900.1.p  8 RGPWTEQEDYKLVYFVNMFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 55
                         89********************************************97 PP
2Myb_DNA-binding52.61e-1661106148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+ T++E+ l  d++ ++G++ W++Iar+++ gRt++++k++w++++
  Glyma.11G142900.1.p  61 RGKLTPQEEHLVMDLHSKWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 106
                          7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.76355IPR017930Myb domain
SuperFamilySSF466891.61E-295102IPR009057Homeodomain-like
SMARTSM007173.8E-15757IPR001005SANT/Myb domain
PfamPF002493.1E-15855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-21961IPR009057Homeodomain-like
CDDcd001671.57E-101055No hitNo description
PROSITE profilePS5129427.03656110IPR017930Myb domain
SMARTSM007171.6E-1360108IPR001005SANT/Myb domain
PfamPF002495.1E-1561105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-2462109IPR009057Homeodomain-like
CDDcd001673.50E-965106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MVQQEIRRGP WTEQEDYKLV YFVNMFGDRR WDFIAKVSGL NRTGKSCRLR WVNYLHPDLK  60
RGKLTPQEEH LVMDLHSKWG NRWSRIARRL PGRTDNEIKN YWRTHMRKKK AQEKKHASAA  120
SPVSSSCQSS LSSNNHVVDS HASKEVGEES CYDTGGYDDG MMMGLIGGEK GYSMDDIWKD  180
IMSEEENNIY NNNLQPVYEG HSEEGCNFSC PPPPMIMPSP PSWDQYNISS QPLWVMDEEE  240
SNKMLFPTLS DQYFPYYEQG NAFLTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-2851091104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.295160.0cotyledon| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB59-1 and isoform MYB59-2 are present in roots, leaves, and seedlings, while the expression of isoform MYB59-3 and isoform MYB59-4 is confined to seedlings. {ECO:0000269|PubMed:16531467}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G142900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0972740.0BT097274.1 Soybean clone JCVI-FLGm-21F20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025980194.11e-165transcription factor MYB59
RefseqXP_028191333.11e-165transcription factor MYB59-like
SwissprotQ4JL842e-76MYB59_ARATH; Transcription factor MYB59
TrEMBLA0A0R0HH720.0A0A0R0HH72_SOYBN; Uncharacterized protein
STRINGGLYMA11G15180.61e-164(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.33e-72myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]