PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G138700.3.p
Common NameGLYMA_11G138700, LOC100797436
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 685aa    MW: 76558.3 Da    PI: 8.3438
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G138700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07583632147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          r +++ +E e lv+av++lG+g+W+ +  +     ++Rt  ++k++w ++
  Glyma.11G138700.3.p 583 RRPFSVDEVEALVQAVEKLGTGRWRDVKLCAFdnaNHRTYVDLKDKWKTL 632
                          6799***********************999999999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.20.907.6E-4388462No hitNo description
SuperFamilySSF542367.02E-7389474IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.293578637IPR017930Myb domain
SMARTSM007177.7E-8582635IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-10583633IPR009057Homeodomain-like
CDDcd116603.80E-17584634No hitNo description
SuperFamilySSF466894.08E-16584665IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MVLQKRLEYG FNGYQAPAMP RASRSTRRRA KFRRAEDNQK CAFDLLATVA GKLLQERENP  60
TMSSDTSLEK DQCGFVKECQ DANKPSKSEI SDEGSCDNSG FSRLSSQTNK KNCGLKEFTH  120
LAIDGDVGIA SIVTSSSCLE RFIAEKMVDS NSHFKVENVT SKVNLDFSDY PKDSDFKLDG  180
DTSKGKDELH KFEKVPIGSG IDMCNFEDPL DVNPPALISL GGNAKLSGYN DRIPCSLLSK  240
SRDNVPVVSR DDDENSSGCT HPINTETKSF RPKTCIGKRM ASNFQKVAEK TKNYALSNND  300
GDWKRTYLSK RNCNKHQSSQ MNIPFKKRKL FNYRSVANSN GLIRRGGIYY SPENCMNQDG  360
CDSPPGMHKD PGMSSLEACQ HQTLRSIGSH VNLRIKSFRV PELFIEVPET ATIGSLKRTV  420
MDAVTAVLGG ELHIGVFLQG KQVKDDSKTL LQTGISHHNE LDALGFTLEP NSSQSLPIVC  480
ASHSPRPKAD ITEPVIRYPS SPAVIHQRIQ GNSDMLPEHQ VTSLGRHFES DHDSAPSPVN  540
VSVDKNMKDS KELVTVPEMD EELAMVPVHQ KPKRSEIVQR RIRRPFSVDE VEALVQAVEK  600
LGTGRWRDVK LCAFDNANHR TYVDLKDKWK TLVHTARISP QQRRGEPVPQ ELLDRVLVAH  660
AYWSQQQTKS QHKHHPETET VFSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-555676721105Telomere binding protein TBP1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.310670.0cotyledon| leaf| root| seed coat| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G138700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539084.10.0telomere repeat-binding protein 5 isoform X2
RefseqXP_028188279.10.0telomere repeat-binding protein 5-like isoform X2
TrEMBLA0A445I1580.0A0A445I158_GLYSO; Telomere repeat-binding protein 5 isoform B
TrEMBLK7LPN40.0K7LPN4_SOYBN; Uncharacterized protein
STRINGGLYMA11G14760.60.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-118TRF-like 2