PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G138700.1.p
Common NameGLYMA_11G138700, LOC100797436
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 691aa    MW: 77254.1 Da    PI: 8.3451
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G138700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07589638147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          r +++ +E e lv+av++lG+g+W+ +  +     ++Rt  ++k++w ++
  Glyma.11G138700.1.p 589 RRPFSVDEVEALVQAVEKLGTGRWRDVKLCAFdnaNHRTYVDLKDKWKTL 638
                          6799***********************999999999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.20.907.7E-4394468No hitNo description
SuperFamilySSF542367.02E-7395480IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.293584643IPR017930Myb domain
SMARTSM007177.7E-8588641IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-10589639IPR009057Homeodomain-like
CDDcd116603.44E-17590640No hitNo description
SuperFamilySSF466894.16E-16590671IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MVLQKRLEYG FNGYQAPAMP RASRSTRRRA KFRRAEDNQK CAFDLLATVA GKLLQERENP  60
TMSSDTSLEK DQCGFVKECQ DANKPSKSEI SDEGSCDNSG FSRLSSQTNK KNCGLKEFTH  120
LAIDGDVGIA SIVTSSSCLE RFIAEKMVDS NSHFKVENVT SKVNLDFSDY PKDSDFKLDG  180
DTSKGKDELH KFEKVPIGSG IDMCNFEDPL DVNPPALISL GGNAKLSGYN DRIPCSLLSK  240
SRDNVPVVSR DDDENSSGCT HPINTETKSF RPKTCIGKRM ASNFQKVAEK TKNYALSNND  300
GDWKRTYLSK RNCNKHQSSQ MNIPFKKRKL FNYRSVANSN GLIRRGGIYY SPENCMNQDG  360
CDSPPGMHKV QIFHADPGMS SLEACQHQTL RSIGSHVNLR IKSFRVPELF IEVPETATIG  420
SLKRTVMDAV TAVLGGELHI GVFLQGKQVK DDSKTLLQTG ISHHNELDAL GFTLEPNSSQ  480
SLPIVCASHS PRPKADITEP VIRYPSSPAV IHQRIQGNSD MLPEHQVTSL GRHFESDHDS  540
APSPVNVSVD KNMKDSKELV TVPEMDEELA MVPVHQKPKR SEIVQRRIRR PFSVDEVEAL  600
VQAVEKLGTG RWRDVKLCAF DNANHRTYVD LKDKWKTLVH TARISPQQRR GEPVPQELLD  660
RVLVAHAYWS QQQTKSQHKH HPETETVFSF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-555736781105Telomere binding protein TBP1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.310670.0cotyledon| leaf| root| seed coat| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G138700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006590983.10.0telomere repeat-binding protein 5 isoform X1
RefseqXP_014619526.10.0telomere repeat-binding protein 5 isoform X1
RefseqXP_028188277.10.0telomere repeat-binding protein 5-like isoform X1
RefseqXP_028188278.10.0telomere repeat-binding protein 5-like isoform X1
TrEMBLA0A445I1F00.0A0A445I1F0_GLYSO; Telomere repeat-binding protein 5 isoform A
TrEMBLK7LPN30.0K7LPN3_SOYBN; Uncharacterized protein
STRINGGLYMA11G14760.60.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Representative plantOGRP13911225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-117TRF-like 2