PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G127400.2.p | ||||||||
Common Name | GLYMA_11G127400, LOC100780613 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 264aa MW: 29426.7 Da PI: 5.9446 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 93.4 | 2.8e-29 | 88 | 175 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+evGF vr+sk ++s+r+g+ + rt+vC+keg+r +k++ k r+raetr+gC+a+++v+k ++gkw+v+k+++eH+H+l+p Glyma.11G127400.2.p 88 FYNAYATEVGFIVRVSKLSRSRRDGTAIGRTLVCNKEGFRMADKRE--KIVRQRAETRVGCRAMIMVRKLSSGKWVVAKFVKEHTHPLTP 175 ******************************************9988..9**************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.5E-26 | 88 | 175 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MEVEIDGSVT VETVGNTAIG EVSSIADDNR EGGSSVEPND NQDQHDNGTQ DSSGGITIPS 60 AIPTVSVVSV EEPYVGQEFG SEAAAHAFYN AYATEVGFIV RVSKLSRSRR DGTAIGRTLV 120 CNKEGFRMAD KREKIVRQRA ETRVGCRAMI MVRKLSSGKW VVAKFVKEHT HPLTPGKGRR 180 DFYYEQYPTE QDKIRELSQQ LATEKKRSAA YKRHLELIFE QIEEQNDNLS KKIQHIVDCV 240 KEMEAKEEHS RQCEGDGSQR TTE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.13098 | 0.0 | leaf| somatic embryo| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G127400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094494 | 0.0 | BT094494.1 Soybean clone JCVI-FLGm-18B16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003537936.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 isoform X2 | ||||
Refseq | XP_028190112.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like | ||||
TrEMBL | A0A445I0Q2 | 0.0 | A0A445I0Q2_GLYSO; Protein FAR1-RELATED SEQUENCE 5 isoform B | ||||
TrEMBL | I1LJP6 | 0.0 | I1LJP6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G13610.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-88 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G127400.2.p |
Entrez Gene | 100780613 |