PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G108100.1.p | ||||||||
Common Name | GLYMA_11G108100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bZIP | ||||||||
Protein Properties | Length: 271aa MW: 29315.8 Da PI: 6.5755 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 27 | 9.8e-09 | 87 | 137 | 1 | 51 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 ek++ +r N+eA r++R++Kka+ + Le++v +L a N+ L k+l+ Glyma.11G108100.1.p 87 EKKSSSKKRPLGNKEAVRKYREKKKARAASLEDEVVKLRALNQHLMKKLQG 137 567777899999***********************************9974 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 8.0E-13 | 85 | 155 | No hit | No description |
SMART | SM00338 | 5.6E-9 | 87 | 154 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 5.7E-12 | 90 | 144 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.0E-6 | 94 | 137 | No hit | No description |
CDD | cd14686 | 3.99E-11 | 95 | 146 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MDDGELDFSN HEVFSSPNMG ELPSSGSMDS FFDELLKDTH ACTHTHTCNP PGPDFSHTHT 60 CYHVHTKIVP APEEDQVATD DTAESAEKKS SSKKRPLGNK EAVRKYREKK KARAASLEDE 120 VVKLRALNQH LMKKLQGQAA LEAEIARLKC LLVDIRGRIE GEIGSFPYQK TTTTTPNPVA 180 GSYVMNPCNL PCDDRVYCLH PDGRIGETAA LNGEEFDGCE FENLQCLASQ NLGLKDLRAC 240 GVGVGHTGSN VNSSALSKKR KGGSRAATAG * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.7103 | 0.0 | pod| root| seed coat| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G108100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235419 | 0.0 | AC235419.1 Glycine max strain Williams 82 clone GM_WBb0136G05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001237296.2 | 0.0 | bZIP transcription factor bZIP121 | ||||
Refseq | XP_006590381.1 | 0.0 | bZIP transcription factor bZIP121 isoform X1 | ||||
Refseq | XP_006590382.1 | 0.0 | bZIP transcription factor bZIP121 isoform X1 | ||||
Refseq | XP_014619019.1 | 0.0 | bZIP transcription factor bZIP121 isoform X1 | ||||
Refseq | XP_014619020.1 | 0.0 | bZIP transcription factor bZIP121 isoform X1 | ||||
Refseq | XP_028190347.1 | 0.0 | basic leucine zipper 23-like | ||||
Refseq | XP_028190348.1 | 0.0 | basic leucine zipper 23-like | ||||
Refseq | XP_028190350.1 | 0.0 | basic leucine zipper 23-like | ||||
Refseq | XP_028190351.1 | 0.0 | basic leucine zipper 23-like | ||||
Refseq | XP_028190352.1 | 0.0 | basic leucine zipper 23-like | ||||
Swissprot | Q8GTS2 | 1e-109 | BZP23_ARATH; Basic leucine zipper 23 | ||||
TrEMBL | A0A445HZT3 | 0.0 | A0A445HZT3_GLYSO; Basic leucine zipper 23 isoform A | ||||
TrEMBL | I1LJ22 | 0.0 | I1LJ22_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G11540.4 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2567 | 32 | 77 | Representative plant | OGRP1970 | 15 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16770.1 | 5e-94 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G108100.1.p |
Entrez Gene | 778149 |
Publications ? help Back to Top | |||
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