PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G076500.1.p
Common NameGLYMA_11G076500, LOC100803815
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WOX
Protein Properties Length: 290aa    MW: 32527.6 Da    PI: 8.2093
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G076500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.27.6e-203394257
                         T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         ++R+t+t++q+++L++l+++   r psae++++++++l    +++ ++V++WFqN++a+e++
  Glyma.11G076500.1.p 33 STRWTPTNDQIRILKDLYYNngIRSPSAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 94
                         58*****************8567*************************************97 PP
2Wus_type_Homeobox112.71.9e-363296265
    Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                         ++tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
  Glyma.11G076500.1.p 32 SSTRWTPTNDQIRILKDLYYnNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 96
                         789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.58E-1127100IPR009057Homeodomain-like
PROSITE profilePS5007110.9322995IPR001356Homeobox domain
SMARTSM003898.0E-63199IPR001356Homeobox domain
CDDcd000861.48E-73496No hitNo description
PfamPF000462.4E-173494IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-73494IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MMEPQQQQGS QQQQQNEDAG GSGKGGFLSR QSSTRWTPTN DQIRILKDLY YNNGIRSPSA  60
EQIQRISARL RQYGKIEGKN VFYWFQNHKA RERQKKRFTF DHNNNNVPMQ QRPPTHPNPS  120
ASAWKPDPIH TKYSNISSTA GISSASSSSV EMVTVGHMGN YGYGSAPMEK SFRDCSISAG  180
GSSGHVGINH NLGWVGVDPY SSTYANFFDK IRPTDQEEEA ENFGATKIET LPLFPMHGED  240
IHGYCNLKSN SYNYDGNGWY HTEEGFKNAS RASLELSLNS YTRRSPDYD*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In the active shoot meristem, it is specifically expressed in a small cell group underneath the presume position of stem cells. {ECO:0000269|PubMed:12208843}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G076500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8730900.0EU873090.1 Glycine max wuschel gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006590724.10.0protein WUSCHEL
RefseqXP_028187801.10.0protein WUSCHEL-like
SwissprotQ8LL112e-82WUS_PETHY; Protein WUSCHEL
TrEMBLA0A445HYS60.0A0A445HYS6_GLYSO; Protein WUSCHEL
TrEMBLK7LNJ80.0K7LNJ8_SOYBN; Uncharacterized protein
STRINGGLYMA11G08091.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82413345
Representative plantOGRP90871114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-47WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]