PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G058400.2.p | ||||||||
Common Name | GLYMA_11G058400, LOC100816778 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 309aa MW: 33913 Da PI: 7.3981 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138.7 | 2e-43 | 8 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrrkC+++Cv+apyfp ++p++fa+vhk+FGasnv kll++l+ +r+da++sl+yeAear+rdPvyG+vg+i+ lq++l+q Glyma.11G058400.2.p 8 PCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELSAAQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHKLRQI 97 7***************************************************************************************** PP DUF260 91 kaelallkee 100 ++el+ +k+e Glyma.11G058400.2.p 98 QVELSNAKKE 107 *****99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.748 | 7 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-43 | 8 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009954 | Biological Process | proximal/distal pattern formation | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0048441 | Biological Process | petal development |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MSSSSNSPCA ACKFLRRKCT QECVFAPYFP PDNPQRFAYV HKVFGASNVA KLLNELSAAQ 60 RDDAVKSLAY EAEARLRDPV YGCVGLISVL QHKLRQIQVE LSNAKKELAN YIGPQALQGI 120 PAPMLQQHPN NPFPGAMYGN MPTATASVHG GQLVIRDAQP VPHHHHHHQQ QILEAQQLAA 180 AVAAREQQEM FRSYEHQQQQ EFLRFSGGGF DMGSASSAGG FSQVSPAAGS ADQLSPSLAL 240 GSFDNAYHMQ QQPQQGEPHH HHHPHHIPLA AQLLLPPQQK QQTHHESQLP LHRQHSESEE 300 CRSVGPSC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-48 | 1 | 124 | 4 | 126 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-48 | 1 | 124 | 4 | 126 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in trichomes, at the base of many lateral organs, including branching points of the inflorescence and floral organs and in the distal part of the pistil at stages when style and stigma start to develop. Also detected in pedicels and at the base of petals and sepals. {ECO:0000269|PubMed:15821980}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G058400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235183 | 0.0 | AC235183.1 Glycine max strain Williams 82 clone GM_WBb0008G09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003538822.1 | 0.0 | LOB domain-containing protein 36 | ||||
Refseq | XP_006590661.1 | 0.0 | LOB domain-containing protein 36 | ||||
Refseq | XP_014619341.1 | 0.0 | LOB domain-containing protein 36 | ||||
Refseq | XP_028188561.1 | 0.0 | LOB domain-containing protein 36-like | ||||
Refseq | XP_028188562.1 | 0.0 | LOB domain-containing protein 36-like | ||||
Swissprot | Q9FKZ3 | 4e-72 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A445HYG7 | 0.0 | A0A445HYG7_GLYSO; LOB domain-containing protein 36 isoform A | ||||
TrEMBL | K7LN93 | 0.0 | K7LN93_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G06210.3 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 2e-67 | ASYMMETRIC LEAVES 2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G058400.2.p |
Entrez Gene | 100816778 |
Publications ? help Back to Top | |||
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