PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.10G280000.1.p | ||||||||
Common Name | GLYMA_10G280000, LOC100786121 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 572aa MW: 61730.7 Da PI: 9.5737 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 2.9e-05 | 72 | 94 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Glyma.10G280000.1.p 72 FICEVCNKGFQREQNLQLHRRGH 94 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.9 | 0.00069 | 148 | 170 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Glyma.10G280000.1.p 148 WKCDKCSKKYAVQSDWKAHSKTC 170 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.71E-7 | 71 | 94 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.3E-6 | 71 | 94 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 2.8E-5 | 72 | 94 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.99 | 72 | 94 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0052 | 72 | 94 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 74 | 94 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 113 | 143 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.4E-5 | 136 | 169 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.71E-7 | 143 | 168 | No hit | No description |
SMART | SM00355 | 150 | 148 | 168 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 572 aa Download sequence Send to blast |
MAASSSSASL FGFREEDQQN QMKQQHSLTP SPSTTPAAPP PQKKKRNQPG TPYPDAEVIA 60 LSPKTLMATN RFICEVCNKG FQREQNLQLH RRGHNLPWKL KQKTTKEPKR KVYLCPEPTC 120 VHHDPSRALG DLTGIKKHYS RKHGEKKWKC DKCSKKYAVQ SDWKAHSKTC GTREYRCDCG 180 TLFSRRDSFI THRAFCDALA QESARQPPSL SGGGIGSHLY GSTTNMALNL SQVGSQIQDP 240 SNAQPTELLR LGATSGRTGH FDHILGSPFR PSNQQQQPFF MSEQPNQTYH HPDQNKPFQQ 300 GLMQQLSDHH HLNNNNSPFN LPFLSSNTAN ASFSEHFNNA NGGGNNNNNN EGTNYFATSS 360 APSLFSNSAN ANANALSHMS ATALLQKAAQ MGATSSNGTA SLLKSFGSAS SSSGGGSKSE 420 QQHRVPPLVN AANYVGGMFG GNHVNEQQSN SNLQDLMNSF AVGGNSSIFE AGGFEAYDHS 480 NNNNNRDPKV LAMSGSNSVG GSDRLTRDFL GVGQIVRGMS GSGGVAQREQ QQQHGFNLSS 540 LEAERNNNNN NSNNAAPSSG QAFGGGGGNF Q* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-33 | 144 | 205 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 1e-33 | 144 | 205 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.52481 | 0.0 | cotyledon| epicotyl| seed coat |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaf tissues. {ECO:0000305|PubMed:22898356}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.10G280000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC160454 | 0.0 | AC160454.31 Glycine max cultivar Williams 82 clone gmw1-15k6, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003536713.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_014618914.1 | 0.0 | protein indeterminate-domain 5, chloroplastic | ||||
Swissprot | Q9ZUL3 | 1e-135 | IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | I1LF27 | 0.0 | I1LF27_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G42660.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1536 | 33 | 97 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G02070.1 | 1e-104 | indeterminate(ID)-domain 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.10G280000.1.p |
Entrez Gene | 100786121 |
Publications ? help Back to Top | |||
---|---|---|---|
|