PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G273000.1.p
Common NameGLYMA_10G273000, LOC100780759
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 309aa    MW: 35322.6 Da    PI: 6.5133
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G273000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14.1e-182067148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEd ll+++++++G g+W+  a+  g++Rt+k+c++rw++yl
  Glyma.10G273000.1.p 20 RGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYL 67
                         89********************************************97 PP
2Myb_DNA-binding52.61e-1673116146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Glyma.10G273000.1.p  73 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 116
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.7621567IPR017930Myb domain
SuperFamilySSF466893.74E-3118114IPR009057Homeodomain-like
SMARTSM007172.4E-151969IPR001005SANT/Myb domain
PfamPF002491.6E-162067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-232174IPR009057Homeodomain-like
CDDcd001677.64E-122267No hitNo description
PROSITE patternPS0017503544IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129425.95368122IPR017930Myb domain
SMARTSM007173.5E-1572120IPR001005SANT/Myb domain
PfamPF002491.3E-1573116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2375121IPR009057Homeodomain-like
CDDcd001671.73E-1177116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MSTIAKRDLS SNEEESELRR GPWTLEEDSL LIHYIARHGE GRWNMLAKSA GLKRTGKSCR  60
LRWLNYLKPD IKRGNLTPQE QLLILELHSK WGNRWSKIAQ HLPGRTDNEI KNYWRTRIQK  120
QARQLNIESG SKRFIDAVKC FWMPRLLQKM EQSNSPSPHH SSMTNMMNLG NSGEASMSSM  180
SSSFNINPSM SSSSSPPQRE FIMDDANHFN TMSNPINPSP DSFQFSQLLE ISEHPKSPSN  240
VFENNVCSYP IQDNCYVDTN NYGMEGINMD PLSAMDTYDF PQFDFQTAGN GWMLDSMGDS  300
TLWNMEAM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26171224108B-MYB
1h8a_C5e-261712224128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:19529828}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G273000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535723.10.0transcription factor MYB62
RefseqXP_028184116.10.0transcription factor MYB62-like
SwissprotQ9C9G75e-85MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A0B2PD190.0A0A0B2PD19_GLYSO; Transcription factor MYB21
TrEMBLI1LEV60.0I1LEV6_SOYBN; Uncharacterized protein
STRINGGLYMA10G41930.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.15e-84myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]