PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G236600.1.p
Common NameGLYMA_10G236600, LOC100790724
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 271aa    MW: 30790.8 Da    PI: 9.1004
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G236600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.77.5e-151562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEd +l + + ++G g+W++++ + g+ R +k+c++rw +yl
  Glyma.10G236600.1.p 15 KGLWSPEEDNKLRNHILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYL 62
                         678*******************************************97 PP
2Myb_DNA-binding52.41.2e-1668113148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+++++E+e ++ ++ +lG++ W+ I+++++ gRt++++k++w++yl
  Glyma.10G236600.1.p  68 RGKFSKQEEETILTLHDMLGNK-WSQISQHLP-GRTDNEIKNYWHSYL 113
                          89********************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-22965IPR009057Homeodomain-like
PROSITE profilePS5129416.6541062IPR017930Myb domain
SuperFamilySSF466891.18E-2813109IPR009057Homeodomain-like
SMARTSM007172.8E-111464IPR001005SANT/Myb domain
PfamPF002492.8E-131562IPR001005SANT/Myb domain
CDDcd001671.36E-91862No hitNo description
PROSITE profilePS5129426.03863117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2566117IPR009057Homeodomain-like
SMARTSM007171.4E-1567115IPR001005SANT/Myb domain
PfamPF002491.0E-1568113IPR001005SANT/Myb domain
CDDcd001672.89E-1070113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGFQPMEKGK AKHKKGLWSP EEDNKLRNHI LKHGHGCWSS VPIKAGLQRN GKSCRLRWIN  60
YLRPGLKRGK FSKQEEETIL TLHDMLGNKW SQISQHLPGR TDNEIKNYWH SYLKKRVAKA  120
KEMESHNQIK YASSSSDTID SSNSIQKLAT QGQQIYNFTK ESCQSSLPKL LFAEWLSLDH  180
VNSANSVESL GLRNGFDHNS TFQEAAIHDM SEVPFGGDYN RCVSNIPAPE MFNSQLKYAN  240
QMVENGYIHC MPGFDLSSNF SMSNDAIMYI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-221511727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.195150.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G236600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0977340.0BT097734.1 Soybean clone JCVI-FLGm-16G14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241320.10.0uncharacterized protein LOC100790724
RefseqXP_028182469.10.0transcription factor LAF1-like
SwissprotQ9M0K42e-59LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A0B2QNK30.0A0A0B2QNK3_GLYSO; Transcription factor LAF1
TrEMBLC6TJ900.0C6TJ90_SOYBN; Uncharacterized protein
STRINGGLYMA10G38110.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48920.14e-62myb domain protein 45
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]