PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G233400.2.p | ||||||||
Common Name | GLYMA_10G233400, LOC100799153 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 671aa MW: 74500.2 Da PI: 9.0323 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.7 | 4.2e-05 | 77 | 99 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 kC++C++ F ++ n++rHir+ H Glyma.10G233400.2.p 77 KCNKCSREFCSPINYRRHIRVqH 99 7*******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.328 | 76 | 104 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 78 | 99 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 671 aa Download sequence Send to blast |
MPVAKLPASG TIDFRKTDDG SDSLDTIIRQ AIGKEPLLSF PRAGDSPVQW IQLLNALDQQ 60 ELPGWPLLSP VKVQLQKCNK CSREFCSPIN YRRHIRVQHR LKKLDKDSEK NRDLLGAYWD 120 KLSIEESKEV VSFKNVMLEE VPGSSILEAL TTLRKQGFSS LPQYYLRAGT ALLNIVQSRP 180 SSFPISSQEL FSILDDSSEK TFLVGSAVSM QRYVFDGEAG KIGLEPKNLV ACTSFLLEQK 240 LVKAWLADKD AEALRCQKLL VEEEEAAQKR KAEILERKRQ KKLRQKEHKA RERLEDDTEI 300 KENISSTGED VLPAEASSGT CDFEAQNPDI FADHSPPPHV TSRCLDTNEV VEGDTVSGYD 360 FDTDQYIERQ ASRGHNRRRI MAARWQGLPK SQWAKANGSH AGQNSQMSKL GVIQKHGTNR 420 DQRAAPIVNG SKVWSRKPKP ETNGVVLKAK LQKEPDKGKS HEVLIGSVSV SLDYCSSHSQ 480 GNLVAAQRDC VVENLAKQNT AQEKPVKHDS FQGSNGRLTV KLWRPVSQLG TKDPLPLQNG 540 ETEADVINGK YDQNLSGQSS LRLCSIDGSD IGFEDNFSHT GAKVDSESLR LTSHAAKAFL 600 AQRWKEAISS NHVKLVVTPD CQSSNADRFN ILANTENRLP ATSGVAKSKP KTKPEKGMKI 660 KYIPKQKEAT * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 275 | 282 | ERKRQKKL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.16117 | 0.0 | cotyledon| flower| hypocotyl| leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G233400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-145 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014618835.1 | 0.0 | uncharacterized protein LOC100799153 | ||||
Refseq | XP_028185431.1 | 0.0 | uncharacterized protein LOC114372182 | ||||
TrEMBL | A0A0B2QNN8 | 0.0 | A0A0B2QNN8_GLYSO; Uncharacterized protein | ||||
TrEMBL | I1LDP3 | 0.0 | I1LDP3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G37780.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25610.1 | 1e-151 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G233400.2.p |
Entrez Gene | 100799153 |