PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G223200.1.p
Common NameGLYMA_10G223200, LOC100777915
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 274aa    MW: 29056.2 Da    PI: 8.8601
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G223200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.69.7e-2161111256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                          +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g+
  Glyma.10G223200.1.p  61 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRGN 111
                          7********.**********7.....337*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.3E-3361119IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2361119IPR016177DNA-binding domain
SMARTSM003806.8E-3961124IPR001471AP2/ERF domain
PROSITE profilePS5103225.71261118IPR001471AP2/ERF domain
PfamPF008471.9E-1461110IPR001471AP2/ERF domain
PRINTSPR003675.6E-126273IPR001471AP2/ERF domain
CDDcd000181.53E-1469119No hitNo description
PRINTSPR003675.6E-1284100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MMSRFMNAPS SPGLSPLFGV GHKRAREDDT GAGASVGLGV VAAASSQTQG NESGGGERRR  60
RYRGVRQRPW GKWAAEIRDP HKAARVWLGT FDTAEAAARA YDEAALRFRG NRAKLNFPEN  120
VVQVQPPPPL PNLPASAVAG SGSGSVVTGF APTVMQGTRF QDSSDFLRDY WGYSQLLRST  180
GEFHGLDHWF FDSQMAAFQS SLPSSLLPSP PPPAFLPSSA SYPLFSSSQQ MGIFRPPGEQ  240
GHGGEDGGSG SGFTELLPST WSDTSGYPPP PPG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2260121466ATERF1
3gcc_A1e-2260121466ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15661ERRRRY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.507620.0flower| hypocotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G223200.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0118220.0AP011822.1 Glycine max DNA, BAC clone: WBb35C13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006589489.10.0ethylene-responsive transcription factor ERF110
RefseqXP_014618826.10.0ethylene-responsive transcription factor ERF110
RefseqXP_025979940.10.0ethylene-responsive transcription factor ERF110
RefseqXP_028183340.10.0ethylene-responsive transcription factor ERF110-like
RefseqXP_028183341.10.0ethylene-responsive transcription factor ERF110-like
TrEMBLA0A445IR760.0A0A445IR76_GLYSO; Ethylene-responsive transcription factor ERF114
STRINGGLYMA10G36760.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.19e-11ethylene response factor 110