PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G113800.1.p | ||||||||
Common Name | GLYMA_10G113800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 121aa MW: 13709.2 Da PI: 9.4941 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 53.8 | 3.9e-17 | 28 | 63 | 2 | 36 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EE CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkk 36 +D y+WrKYG+K+ ++++ pr+Y++C++a +Cpv k Glyma.10G113800.1.p 28 RDRYQWRKYGKKVTRDNPSPRAYFKCSYApSCPVNK 63 7***************************99****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 14.837 | 22 | 63 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-14 | 25 | 64 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.9E-15 | 25 | 63 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.3E-8 | 27 | 85 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-12 | 29 | 63 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MPSQIFMCKI NLLGPITQSI ALLTEYVRDR YQWRKYGKKV TRDNPSPRAY FKCSYAPSCP 60 VNKFDLYDLF PRIMLITDSV MSHLSQVQSQ IEQPILSPLI INMGKIACWG GGCFILGTKI 120 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G113800.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 6e-36 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001240986.1 | 9e-20 | WRKY transcription factor 17 | ||||
Refseq | XP_028235171.1 | 9e-20 | probable WRKY transcription factor 40 | ||||
TrEMBL | I1L9Z3 | 3e-84 | I1L9Z3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G13720.1 | 5e-85 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31800.1 | 3e-19 | WRKY DNA-binding protein 18 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G113800.1.p |