PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G100400.1.p
Common NameGLYMA_10G100400, LOC100813554
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 711aa    MW: 77369.5 Da    PI: 5.9825
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G100400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07276296526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C++f++ G C++Gd C +aHg
  Glyma.10G100400.1.p 276 PCPDFRK-GACRRGDMCEYAHG 296
                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.205.9E-179147IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484039.95E-1710139IPR020683Ankyrin repeat-containing domain
SMARTSM0024838001140IPR002110Ankyrin repeat
CDDcd002044.21E-1516136No hitNo description
SMARTSM002480.0085888IPR002110Ankyrin repeat
PfamPF127969.0E-858127IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.01658165IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.03393128IPR002110Ankyrin repeat
SMARTSM002480.001493125IPR002110Ankyrin repeat
SMARTSM003564.0E-6271297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4275298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582276298IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-5276296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-4304334IPR000571Zinc finger, CCCH-type
SMARTSM0035630306329IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MMNNLTIETE DSFASLLELA ANNDVEGFKR MIERDPSCVD EVGLWYSRQK GSRRMVNELR  60
TPLMVAATYG SIDILDLILS LSGCDINKPC GLDKSTALHC AASGGSENVV DVVILLLAAG  120
ADPNSVDGNG HRPVDVIVVP PKHESVRNNL EALLQTDDSI AVCNLRVITA PSNAYSPPLS  180
TSSENGSPSA PDFQLKSKLN DGFISSASDK KEYPVDPSLP DIKNSIYSTD EFRMYSFKVR  240
PCSRAYSHDW TECPFVHPGE NARRRDPRKY HYSCVPCPDF RKGACRRGDM CEYAHGVFEC  300
WLHPAQYRTR LCKDGTSCSR RVCFFAHIAE ELRPLYVSTG SAVPSPRSST SAMDFAAAMN  360
MLPGSPSSMS VMSPSRFTPP MSPSANGMSH PSVAWPQPNV PALHLPGSNI YSSRLRSSFN  420
ARDIPVDDFD LLPDYDVQQQ LLNEFSCLSK QPMNSNAMNR SGRIKTLTPS NLDDLFSSES  480
SSPRFADPAL ASAVFSPTHK SAFLNQFQQQ QSLLSPVNTN FSSKNVENPL LHGASFGGQS  540
SGRMSPRNVE PISPMSSRIS VLVQHEKQQQ FRSLSSRELG SNSATVAAAA AAAGSPANSW  600
SKWGSSNGTL DWAVNADELG KLRRSSSFEH GNNSEEPDFS WVQSLVKESP SEIKENPTMM  660
TTTTTISSVA AAGSSSEVSN MSTQMDAVDH AVLGAWLEQM QLDQLVAQQN *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.613040.0hypocotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G100400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006589016.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_028184182.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A445IKF60.0A0A445IKF6_GLYSO; Zinc finger CCCH domain-containing protein 30
TrEMBLI1LAB50.0I1LAB5_SOYBN; Uncharacterized protein
STRINGGLYMA10G21950.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]