PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G081700.1.p
Common NameGlyma10g10040.2, LOC100791773
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 662aa    MW: 72530 Da    PI: 7.9374
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G081700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.4e-093593961954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Glyma.10G081700.1.p 359 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 396
                          554459******************************88 PP
2BELL121.24.4e-39223294172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          erqe+q+kkakL+++l+eV++rY+qy++q+++vissFe++ag+gsa+ Yt+lAl++iS++FrcLkdai++qi
  Glyma.10G081700.1.p 223 ERQEIQIKKAKLINMLDEVEQRYRQYHNQMKIVISSFEQAAGIGSARTYTALALQTISKQFRCLKDAITGQI 294
                          79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.4E-62149292IPR006563POX domain
PfamPF075261.7E-48154291IPR006563POX domain
PROSITE profilePS5007112.195337400IPR001356Homeobox domain
SMARTSM003895.3E-9340404IPR001356Homeobox domain
CDDcd000865.63E-12340401No hitNo description
SuperFamilySSF466897.7E-17341407IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.4E-29343406IPR009057Homeodomain-like
PfamPF059202.7E-18357396IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MATYFHSNSE IQAGADGLQT LVLMNPGYVQ YSDTPPPPHG GNLVFLNSAA GNASLQSLPH  60
APPPHTQQFV GVPLSAAAHE PPASMHHDVS ALHGFLPRMQ YNLWNTIEHN AAAREAPRAT  120
QGLSLSLHGD HMRASPSSAS GASNGGGVAG IQSVLLSSKY LKATQELLDE VVNVNGGIRV  180
EHAKKLNFEK TKVVGESSTA ASGDGSVGGE GSGKRSSELS TTERQEIQIK KAKLINMLDE  240
VEQRYRQYHN QMKIVISSFE QAAGIGSART YTALALQTIS KQFRCLKDAI TGQIRAANKS  300
LGEEDCFGAK IEGSRLKYVD HHLRQQRAIQ QLGMIHHNAW RPQRGLPERS VSVLRAWLFE  360
HFLHPYPKDS DKHMLAKQTG LTRSQVSNWF INARVRLWKP MVEEMYLEEM KEHELNGSEE  420
KSSKSGEDPA TKTTSPQEKR TSSEIESKSF NSKQDVSKQS QNTPILPTSP PSISPIGGSV  480
KNQSGFSFMG SSELDGITQG SPKKPRNHEI LHSPNRVPSI NMDVKANEAN NEQQLSMDHE  540
RQNNRDSYSF MGNQTNFISG FGQYPIEEIG RFDAEQFTPR FSGKNGVSLT LGLPHCDTLS  600
GTHQSFLPNQ NIQLGRGLDI GEPNQFGALN NSNSHNSAAF ESINMQNPKR FAAQLLPDFV  660
A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-16346404563Homeobox protein Meis2
3k2a_B4e-16346404563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.440780.0seed coat| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G081700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311670.0KT031167.1 Glycine max clone HN_CCL_176 homeodomain/HOMEOBOX transcription factor (Glyma10g10040.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535815.10.0BEL1-like homeodomain protein 1
RefseqXP_006588872.10.0BEL1-like homeodomain protein 1
RefseqXP_014618534.10.0BEL1-like homeodomain protein 1
RefseqXP_014618535.10.0BEL1-like homeodomain protein 1
RefseqXP_014618536.10.0BEL1-like homeodomain protein 1
RefseqXP_028186139.10.0BEL1-like homeodomain protein 1
RefseqXP_028186140.10.0BEL1-like homeodomain protein 1
RefseqXP_028186141.10.0BEL1-like homeodomain protein 1
RefseqXP_028186142.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-177BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A0K2CTJ90.0A0A0K2CTJ9_SOYBN; Homeodomain/HOMEOBOX transcription factor (Fragment)
TrEMBLA0A445IJM40.0A0A445IJM4_GLYSO; BEL1-like homeodomain protein 1 isoform A
TrEMBLI1L9K60.0I1L9K6_SOYBN; Uncharacterized protein
STRINGGLYMA10G10040.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-166BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]