PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G012500.1.p
Common NameGLYMA_10G012500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 452aa    MW: 51852.4 Da    PI: 8.472
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G012500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS197.67.5e-6114341435321
                 GRAS  35 gdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQ 124
                          + ++qR++++f++AL++r+ r  +++ k l+ ++ +   +++++    + ++  P+ ++ ++   qaI+e v++++++H i +di+ G+Q
  Glyma.10G012500.1.p 143 DGAVQRVVFHFAQALQERIRR--ETIGK-LTLNKLK---MDTNM--AVACHQKIPFNQMMQFSGVQAIVENVASKTKIHLINLDIGCGVQ 224
                          6789*****************..33333.3333332...33332..23467889************************************ PP

                 GRAS 125 WpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrl 213
                           +aL+qaLa+R+ e+   l+iT++g    + k+e e+tg+rL +fAe+l++pf ++v+ ++++ ++++e++ ++ +Ea+aV + ++l ++
  Glyma.10G012500.1.p 225 CMALMQALAERQeEQVEILKITAIGL---QGKTEPEKTGKRLVSFAESLNLPFLYKVVFVTSIIEIKVEQFGIEDNEAVAVYSPYMLRTM 311
                          ************556679********...5899********************************************************* PP

                 GRAS 214 ldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303
                          +++s sle+    +++++++++P ++++ e ea+h s++F++rf+eal +ysa+ d++e+ + ++ e r+ +E   l++ i+n+va+e  
  Glyma.10G012500.1.p 312 VSDSDSLEH----LIRVMRKIRPSIMIILELEAKHHSPTFVNRFIEALFFYSAFSDCIETCMKQDYECRMRIEGI-LSEGIRNIVAMEDG 396
                          *99999998....************************************************************99.************** PP

                 GRAS 304 errerhetlekWrerlee 321
                          er  r+ +   Wr+ + +
  Glyma.10G012500.1.p 397 ERMVRNVKIDVWRRFFAR 414
                          *************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.94176447IPR005202Transcription factor GRAS
PfamPF035142.6E-58143414IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MELLGGINTF PTSSEKNQKQ QYDFNFDPLM LEEFNFVLVH QPKQSLQEIK EPKKNEQVLP  60
SSIASLELLS NYGSRFKRLG KQNIIDSNVQ TCVSTPQKLS TEEIIRLAVA RYIQHSTQRH  120
EDVCIPMHPY RFGLGVLSKE LSDGAVQRVV FHFAQALQER IRRETIGKLT LNKLKMDTNM  180
AVACHQKIPF NQMMQFSGVQ AIVENVASKT KIHLINLDIG CGVQCMALMQ ALAERQEEQV  240
EILKITAIGL QGKTEPEKTG KRLVSFAESL NLPFLYKVVF VTSIIEIKVE QFGIEDNEAV  300
AVYSPYMLRT MVSDSDSLEH LIRVMRKIRP SIMIILELEA KHHSPTFVNR FIEALFFYSA  360
FSDCIETCMK QDYECRMRIE GILSEGIRNI VAMEDGERMV RNVKIDVWRR FFARYRMFAC  420
GNFCTVDRNR KCLIFGLKGT PIHSISVWKF L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-2614740041309GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G012500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020225103.10.0scarecrow-like protein 18
TrEMBLK7LGU10.0K7LGU1_SOYBN; Uncharacterized protein
STRINGGLYMA10G01571.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Representative plantOGRP2520734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-38RGA-like 1