PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G266400.1.p
Common NameGLYMA_09G266400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 156aa    MW: 18136.9 Da    PI: 10.2586
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G266400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF977.7e-31958150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krienk+nrqvtfskR++g+lKKA+ELSvLCdaeva++ifs++gkl++++
  Glyma.09G266400.1.p  9 KRIENKINRQVTFSKRKTGLLKKAKELSVLCDAEVALVIFSPRGKLFTFP 58
                         79***********************************************8 PP
2K-box75.51.4e-2573150379
                K-box   3 kssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 
                          k+s+++ + e +++ ++qe++kL++++e  q++qR+l GedL++Ls+keLq Le+qLek+l++ R++K++l++++ + 
  Glyma.09G266400.1.p  73 KYSNQDgNVELENQGWYQEMSKLNEKYEAVQKTQRRLHGEDLGPLSIKELQILEEQLEKALSQARQRKTQLIIDMWKS 150
                          5666666778889***********************************************************998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.922161IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-37160IPR002100Transcription factor, MADS-box
CDDcd002654.19E-37278No hitNo description
SuperFamilySSF554551.31E-31279IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-29323IPR002100Transcription factor, MADS-box
PfamPF003196.1E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-293859IPR002100Transcription factor, MADS-box
PfamPF014867.5E-2184147IPR002487Transcription factor, K-box
PROSITE profilePS5129711.95885155IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRKTGLLK KAKELSVLCD AEVALVIFSP RGKLFTFPDD  60
AQSIIKTYDR YRKYSNQDGN VELENQGWYQ EMSKLNEKYE AVQKTQRRLH GEDLGPLSIK  120
ELQILEEQLE KALSQARQRK TQLIIDMWKS FAKSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-18171172MEF2C
5f28_B1e-18171172MEF2C
5f28_C1e-18171172MEF2C
5f28_D1e-18171172MEF2C
6byy_A1e-18183184MEF2 CHIMERA
6byy_B1e-18183184MEF2 CHIMERA
6byy_C1e-18183184MEF2 CHIMERA
6byy_D1e-18183184MEF2 CHIMERA
6bz1_A1e-18171172MEF2 CHIMERA
6bz1_B1e-18171172MEF2 CHIMERA
6bz1_C1e-18171172MEF2 CHIMERA
6bz1_D1e-18171172MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G266400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025979734.11e-111MADS-box transcription factor 6-like
SwissprotQ8LLR12e-66MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLK7LGA41e-110K7LGA4_SOYBN; Uncharacterized protein
STRINGGLYMA09G40251.11e-110(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-46AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]