PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G251200.4.p
Common NameGLYMA_09G251200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 412aa    MW: 45251.9 Da    PI: 8.3272
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G251200.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.47.5e-111639427
                         ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                         + C+++ rtG C++G++C+F+H+p
  Glyma.09G251200.4.p 16 PDCSYYIRTGLCRFGATCRFNHPP 39
                         78********************97 PP
2zf-CCCH38.12.6e-127195327
                         S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                         +++C+++++tGtCk+G++C+F+H++
  Glyma.09G251200.4.p 71 QPECQYYLKTGTCKFGATCRFHHPR 95
                         799********************96 PP
3zf-CCCH37.54e-12117141327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C +++rtG+Ck+G++CkF+H++
  Glyma.09G251200.4.p 117 EPECAYYLRTGQCKFGNTCKFHHPQ 141
                          799********************97 PP
4zf-CCCH38.61.8e-12273298227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C+f+++tG Ck+G+ C+F+H++
  Glyma.09G251200.4.p 273 DQPECQFYMKTGDCKFGAVCRFHHPR 298
                          689*********************96 PP
5zf-CCCH38.22.4e-12318344127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++lC f++r+G+Ck+G++CkF H++
  Glyma.09G251200.4.p 318 PGEPLCVFYSRYGICKFGPSCKFDHPM 344
                          589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00261239IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-71639IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7841740IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-51740IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-41838IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-66895IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.2536896IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-97195IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-67297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-57495IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.619114142IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5114141IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-10117141IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6117142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4120140IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-5271298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.624271299IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-9273298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-5274300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4277299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821317345IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7317344IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-9319344IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5320344IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4322342IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MEFDAAIPVS REHLPPDCSY YIRTGLCRFG ATCRFNHPPN RKLLPDSFFF ENYQAIAAAR  60
MKGEFPERIG QPECQYYLKT GTCKFGATCR FHHPRDKAGI AGRVAMNILG YPLRPNEPEC  120
AYYLRTGQCK FGNTCKFHHP QPNNMVLSMR SSPVYPTVHS PTTPGQQSYA TGITNWSSSS  180
YIPSPRWQGP SSYAPLILPQ GMVSVPGWSA YSGQMGSDSP QQTMGNGQSY GTSRQSEPAN  240
SGSQGAYSQF RSGSVPVGFY ALQRENIFPE RPDQPECQFY MKTGDCKFGA VCRFHHPRER  300
MIPAPDCVLS PIGLPLRPGE PLCVFYSRYG ICKFGPSCKF DHPMGVFTYN ISASPSADAP  360
GRRMLGSSSG TSALNLSSEG LVESGSANPR RLSLSETRQI PSGDDNIDEE G*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.25760.0hypocotyl| leaf| meristem| pod| root| seed coat| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G251200.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6241380.0EU624138.1 Medicago sativa zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028247761.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLI1L6B20.0I1L6B2_SOYBN; Uncharacterized protein
STRINGGLYMA09G38650.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-161zinc finger protein 1