PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G208500.1.p
Common NameGLYMA_09G208500, LOC778122
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 415aa    MW: 44200.4 Da    PI: 6.5186
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G208500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.55.3e-22308370163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L++e+++++  +++l se+
  Glyma.09G208500.1.p 308 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENASLRSEVNRIRSDYEQLLSEN 370
                          89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077778.7E-29197IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.8E-56136275No hitNo description
Gene3DG3DSA:1.20.5.1704.0E-17301367No hitNo description
SMARTSM003386.0E-22308372IPR004827Basic-leucine zipper domain
PfamPF001701.7E-20308370IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.173310373IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-11311367No hitNo description
CDDcd147025.29E-24313363No hitNo description
PROSITE patternPS000360315330IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MGSSEMDKTT KEKESKTPPP PTSQEQSSTT GTGTINPEWP GFQAYSPIPP HGFLASSPQA  60
HPYMWGVQQF MPPYGTPPHP YVAMYPPGGI YAHPSMPPGS YPFNPFAMPS PNGIAEASGN  120
TPGSMEADGK PSEVKEKLPI KRSKGSLGSL NMITGKNNEH GKTLGTSANG IHSKSGESAS  180
EGEGTSEGSD ANSQNDSQLK SGGRQDSFED EPSQNGSSAY TPQNGGLNIP HTVVNQTMSI  240
IPISAGGAPG AVPGPTTNLN IGMDYWGTPG SSNIPGLGRK VPSTAVAGGM VTVGSRDSAQ  300
SQLWLQDERE LKRQRRKQSN RESARRSRLR KQAECDELAQ RAEALKEENA SLRSEVNRIR  360
SDYEQLLSEN AALKERLGEL PPNDDHHHRS GRNDQHVGND TQQSGQTEAV QGGH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324330RRSRLRK
2324331RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.215930.0cotyledon| hypocotyl| leaf| seed coat
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G208500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3697910.0AF369791.1 Phaseolus vulgaris bZIP transcription factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001345697.10.0putative bZIP domain class transcription factor
RefseqXP_028182085.10.0bZIP transcription factor 16-like
SwissprotQ501B21e-165BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A445J4090.0A0A445J409_GLYSO; BZIP transcription factor 16
TrEMBLI1L5160.0I1L516_SOYBN; Uncharacterized protein
STRINGGLYMA09G34170.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40173256
Representative plantOGRP7001767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-141basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Liao Y, et al.
    Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis.
    Planta, 2008. 228(2): p. 225-40
    [PMID:18365246]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]