PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.09G204500.1.p | ||||||||
Common Name | GLYMA_09G204500, LOC100790168 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 732aa MW: 80189.6 Da PI: 6.4672 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.1 | 2.9e-12 | 549 | 594 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI +L Glyma.09G204500.1.p 549 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYITEL 594 799***********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.7E-58 | 117 | 299 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.193 | 545 | 594 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.36E-15 | 548 | 599 | No hit | No description |
SuperFamily | SSF47459 | 8.51E-19 | 548 | 614 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-18 | 549 | 614 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.9E-10 | 549 | 594 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-16 | 551 | 600 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 732 aa Download sequence Send to blast |
MVRIRTPCLR KSGRFAEGSH SLSLVLSLKL KFTLNALQIN PKLEYLLILS LPNLNPSECF 60 LSVTNPNHQL SQRMNLWTDE NSSVMEAFMP SSDLSSIWPP PAPPQPQSTA VFNQDTLQHR 120 LQALIEGARE TWTYAIFWQS SYDYSGSTLL GWGDGYYKGD DDKAKAKAKS KATSAAEQDH 180 RKKVLRELNS LISGSSSASA SDDVDEEVTD TEWFFLVSMT QSFVNGGGLP GQAFFNSTPV 240 WVTGSDRLSA SPCERARQGH MFGLQTLVCI PSANGVVELG STELIFQNSD LMNKVKVLFN 300 FSNNNFDMGS SWPATSADQG ENDPSSLWLS DPEVRDSVNT AAATPSVMVP AQTQGISISK 360 TMQLESSIQT PGSSTLTETP SSIHAIPQNQ SVFSRELNFS EYGFDPKSGN NQNHHSLKPE 420 SGEILSFGES RRTSYGGVNG NTNTNTNSNS HFFSGQSPFV AAVDENKKNN MSNNGKKRSP 480 NSRGSNDDGM LSFTSGVIIP ATNLKSGGGG DSDHSDLEAS VVKDPVVEPE KRPRKRGRKP 540 ANGREEPLNH VEAERQRREK LNQRFYALRA VVPNVSKMDK ASLLGDAISY ITELKSKLQT 600 LESDKDVLHK QLEGVKKELE KTTDNVSSNH ACNNNNNNKL SSNQPALIDL VEMDVKIIGW 660 DAMITITCSK KNHPAATLMT ALMELDLDVH YATVTLVNDL MIQQATVKMG SRFYTQEQLR 720 AALSAKVGDV R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 1e-75 | 105 | 301 | 1 | 194 | Transcription factor MYC3 |
4rqw_B | 1e-75 | 105 | 301 | 1 | 194 | Transcription factor MYC3 |
4rs9_A | 1e-75 | 105 | 301 | 1 | 194 | Transcription factor MYC3 |
4yz6_A | 1e-75 | 105 | 301 | 1 | 194 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 530 | 538 | KRPRKRGRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.59046 | 0.0 | pod| seed coat| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at low levels in roots, stems, leaves, flowers and fruits. {ECO:0000269|PubMed:15231736}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds to the G-box motif (5'-AACGTG-3') found in the promoter of the jasmonate-induced gene LAPA1 (PubMed:15231736). Acts as negative regulator of blue light-mediated photomorphogenesis and positively regulates root growth (PubMed:24483714). Promotes growth in response to the phytohormones abscisic acid (ABA) and jasmonate (JA) (PubMed:24483714). Binds to the G-box motif (5'-CACGTG-3') of the RBCS-3A gene promoter (PubMed:24483714). Acts downstream of the jasmonate (JA) receptor to orchestrate JA-mediated activation of plant responses (PubMed:28733419). Positively regulates both wound-responsive and pathogen-responsive genes through MYC2-targeted transcription factors (MTFs) involved in early response to JA (PubMed:28733419). With JA2L forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). With ERF.C3 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). Plays a critical role in orchestrating JA-mediated defense gene expression during Botrytis cinerea infection (PubMed:28733419). Regulates negatively defense responses to root-knot nematodes, potentially by mediating crosstalk among the hormones strigolactones, abscisic acid (ABA) and jasmonate (JA) (PubMed:30576511). Regulates the termination of JA-mediated defense responses by specifically binding the G-box (5'-CACATG-3') motifs in the promoters of MTB1, MTB2 and MTB3, which are transcription factors that negatively regulates JA signaling (PubMed:30610166). May be involved in JA-induced chilling tolerance, possibly by ameliorating the antioxidant enzyme system of fruit and increasing proline and lycopene levels (PubMed:29528226). {ECO:0000269|PubMed:15231736, ECO:0000269|PubMed:24483714, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:29528226, ECO:0000269|PubMed:30576511, ECO:0000269|PubMed:30610166}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.09G204500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by methyl jasmonate (PubMed:15231736, PubMed:28733419). Induced by wounding (PubMed:15231736). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced in fruit by storage in cold (PubMed:29528226). Induced by hydrogen peroxide and infection with root-knot nematodes (PubMed:30576511). {ECO:0000269|PubMed:15231736, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:29528226, ECO:0000269|PubMed:30576511}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003534274.2 | 0.0 | transcription factor MYC2 | ||||
Refseq | XP_028182055.1 | 0.0 | transcription factor MYC2-like | ||||
Swissprot | A0A3Q7HRZ6 | 0.0 | MYC2_SOLLC; Transcription factor MYC2 | ||||
TrEMBL | A0A445J3R0 | 0.0 | A0A445J3R0_GLYSO; Transcription factor MYC2 | ||||
TrEMBL | K7LF24 | 0.0 | K7LF24_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G33730.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2938 | 33 | 64 | Representative plant | OGRP3733 | 12 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32640.1 | 1e-168 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.09G204500.1.p |
Entrez Gene | 100790168 |